# gst: apropos of 'fleeting (transient) interactions'

AA << captured highly transient interactions between transcription factors-proteins that control gene expression-and target genes in the genome and showed that these typically missed interactions have important practical implications. >>

<< Our approaches to capturing transient transcription factor-target interactions genome-wide can be applied to validate dynamic interactions of transcription factors for any pathway of interest in agriculture or medicine, >> Gloria Coruzzi. 

Biologists capture fleeting interactions between regulatory proteins and their genome-wide targets. New York University. Mar 2, 2020.

https://m.phys.org/news/2020-03-biologists-capture-fleeting-interactions-regulatory.html

José M. Alvarez, Anna-Lena Schinke, et al. Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade. Nat Commun 11, 1157. doi: 10.1038/s41467-020-14979-6. Mar 2, 2020

https://www.nature.com/articles/s41467-020-14979-6

# life: they used birds to think about and to predict the future.

<< People around the world and throughout history have used birds to think about and predict the future. >>

<< In the Kalahari, southern Africa, !Xõ hunters carefully watch the black-faced babblers after an antelope hunt for signs of where their wounded prey may be. >>

Felice Wyndham. How birds are used to reveal the future. Feb 26, 2020.

https://theconversation.com/how-birds-are-used-to-reveal-the-future-130844

Ethno-ornithology World Atlas

https://ewatlas.net/collection/birds-tell-people-things

Here are some examples ...

'journalists' birds ...

<< Hummingbirds can bring good or bad news. If someone flies nearby you have to say, "You're going to give me good news!" (It's a saying that comes from the Yshir).>>

https://ewatlas.net/digital-heritage/ti%C3%ADnta-polytmus-guainumbi

'ecologist / protester' birds ...

<< If this bird sings at night it warns that white people will be deforesting soon. >>

https://ewatlas.net/digital-heritage/guidob%C3%B3-leptotila-verreauxi

'climatologist' birds ...

<< If one has a gócoco in the house, and the bird digs for a dust bath, it means that the cold weather is coming. It indicates that the weather will be a very rainy and very cloudy weather, but if it sings loud it is warning that the sun will soon rise. >>

https://ewatlas.net/digital-heritage/g%C3%B3coco-chunga-burmeisteri

<< When this bird approaches the Ayoreo village or if you see it in a dive, the noise of its wings warns that a lot of rain will come soon; maybe floods. >>

https://ewatlas.net/digital-heritage/jaac%C3%B3-cairina-moschata

<< This bird announces rain: if it sings in the morning it will rain in the afternoon - she cries because she does not want her nest to get wet. This bird needs high woods and leaves of trees to eat. She is a young lady and she likes young people and always accompanies people every day. >>

https://ewatlas.net/digital-heritage/ngongo%C3%B3-crypturellus-undulatus

<< It may be a warning that if it burns there may be storms or strong winds. >>

https://ewatlas.net/digital-heritage/pi%C3%A1-vireo-olivaceus

<< It says "ti ti ti ti ti ti ti." Warn if the south wind that brings the cold will blow soon. >>

https://ewatlas.net/digital-heritage/totita-hemitriccus-margaritaceiventer-todirostrum-cinereum

Also

keyword 'bird' in FonT

https://flashontrack.blogspot.com/search?q=bird

# gst: continuous, (not intermittent, perpetual) tremors and slips ...

<< Applying deep learning to seismic data has revealed tremor and slip occur at all times—before and after known large-scale slow-slip earthquakes—rather than intermittently in discrete bursts, as previously believed. Even more surprisingly, the machine learning generalizes to other tectonic environments, including the San Andreas Fault. >>

Machine learning reveals earth tremor and slip occur continuously, not intermittently. Los Alamos National Laboratory.  Feb 27, 2020.

https://m.phys.org/news/2020-02-machine-reveals-earth-tremor-intermittently.html

<< Slow earthquakes cyclically load fault zones and have been observed preceding major earthquakes on continental faults as well as subduction zones. Slow earthquakes and associated tremor are common to most subduction zones, taking place downdip from the neighboring locked zone where megathrust earthquakes occur. In the clearest cases, tremor is observed in discrete bursts that are identified from multiple seismic stations. By training a convolutional neural network to recognize known tremor on a single station in Cascadia, we detect weak tremor preceding and following known larger slow earthquakes, the detection rate of these weak tremors approximates the slow slip rate at all times, and the same model is able to recognize tremor from different tectonic environments with no further training. >>

Bertrand Rouet-Leduc, Claudia Hulbert, et al. Probing Slow Earthquakes With Deep Learning. Geophysical Research Letters. Volume 47, Issue 4. doi: 10.1029/2019GL085870. Jan 23, 2020.

https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2019GL085870

# life: Black Death way revisited, the hypothesis, by Parag.

<< Good afternoon to everyone online and in the room. (..) Since yesterday, Denmark, Estonia, Lithuania, Netherlands and Nigeria have all reported their first cases. All these cases have links to Italy. 24 cases have been exported from Italy to 14 countries, and 97 cases have been exported from Iran to 11 countries. >>  

Tedros Adhanom Ghebreyesus.

WHO Director-General's opening remarks at the media briefing on COVID-19. WHO. Feb 28, 2020.

https://www.who.int/dg/speeches/detail/who-director-general-s-opening-remarks-at-the-media-briefing-on-covid-19---28-february-2020

<< A striking overlap exists between the path of today's viral spread and the path of the Black Death in the 1300s. >>

<< It is, of course, far too soon to make such dire predictions about Covid-19. But a striking overlap exists between the path of today's viral spread and the path that emerged in the 1300s. >>

<< The 14th-century plague is said to have originated in northwestern China, with bacteria contracted from marmots. Hebei Province bore the brunt of China’s plague fatalities, with 5 million of its residents perishing in the 1330s. Making its way westward via Silk Road merchants and caravans, the plague took several years to reach Persia, where it killed the Khan overlord Abu Said as well as half the population. In 1347, it entered Europe via Italy’s port of Genoa. >>

<< Now compare that to what we’re seeing today with Covid-19. This time around, the source of illness may have been pangolins or bats instead of marmots. It started in Wuhan, which just happens to be Hebei's capital. The coronavirus reached Iran in a couple of weeks, and so far has infected hundreds of people, even the country’s deputy health minister. Next to Iran, the next worst outbreak is in Italy, with more than 300 cases and rising quickly- and likely spreading through Europe exactly as the plague did centuries ago. >>

<< It is, perhaps no coincidence that, in the past two decades, China has been the origin of SARS, the swine flu, and now the Covid-19 coronavirus. Nor should we be surprised that Iran and Italy have emerged, once more, as waypoints for pandemic spread. What do Iran and Italy have in common today? They are two major anchors of China’s Belt and Road Initiative- also known as the 21st century’s new Silk Roads. >>

Parag Khanna. IDEAS. Covid-19 Is Traveling Along the New Silk Road. Wired. Feb 28, 2020.

https://www.wired.com/story/covid-19-is-traveling-along-the-new-silk-road/

Also

keyword 'virus' by FonT

https://flashontrack.blogspot.com/search?q=virus

keyword 'virus' by Notes

https://inkpi.blogspot.com/search?q=virus

# life: fundamental lesson (also) in Economics, don't squeeze snakes and bats, please.

<< Global shares tumbled further on Friday, on worries that the economic fallout from the global spread of the coronavirus may be more severe than previously expected. >>

Chong Koh Ping.  More Markets Head Toward Corrections as Coronavirus Spooks Investors. Indexes in Tokyo and Seoul extend losses, putting them on track to join U.S. benchmarks in correction territory. By Feb 27, 2020 11:59 pm ET.

https://www.wsj.com/articles/more-markets-head-toward-correction-territory-as-coronavirus-spooks-investors-11582864550

<< PERFORMANCE  5 Day   -11.82% >>

Dow Jones Industrial Average. (Last Updated: Feb 27, 2020 5:20 p.m. EST)

https://www.marketwatch.com/investing/index/djia

Also

keyword "snake" in FonT & Notes

https://flashontrack.blogspot.com/search?q=snake

https://inkpi.blogspot.com/search?q=snake

keyword "bat" in FonT 

https://flashontrack.blogspot.com/search?q=bat

# life: inside the mysterious (i.e. secret) Yunnan cave, a key to the bizarre jump of the Chinese covid-19 virus

<< In 2004, deep in the wilderness of China’s Yunnan province, a group of scientists from the Wuhan Institute of Virology discovered a cave full of wild bats carrying hundreds of SARS-related viruses. Their work, published in a draft paper in 2005, ( Science. 2005 Oct 28;310(5748):676-9. Epub 2005 Sep 29.  https://www.ncbi.nlm.nih.gov/pubmed/16195424 ) unearthed the link between SARS (severe acute respiratory syndrome) and bats for the first time. >>

<< Now the virologist who led that study, Shi Zhengli, has revealed one of the strains found in that cave - the exact location of which is a closely guarded secret - is almost identical to the 2019-nCoV coronavirus which has so far killed at least 1,115 people and infected more than 45,000 worldwide. >>

<< Professor Shi ran the genome sequence of 2019-nCoV - now officially known as COVID-19 - through the bat-related virus database she built up over ten years and found it was a 96 per cent match to a virus found in the droppings of horseshoe bats. >>

Marnie O’Neill. Mysterious bat cave in Chinese wilderness could hold key to coronavirus. news.com.au Feb 13, 2020.

https://www.news.com.au/lifestyle/health/health-problems/mysterious-bat-cave-in-chinese-wilderness-could-hold-key-to-coronavirus/news-story/530063aeb9de7020e626f1c4839b9777

Also

Zhou, P., Yang, X., Wang, X. et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. doi: 10.1038/s41586-020-2012-7. Jan 29, 2020.

https://www.nature.com/articles/s41586-020-2012-7

Human uses of bats (also in chinese traditional medicine). Wikipedia. Last edited 11 days ago by Enwebb.

https://en.m.wikipedia.org/wiki/Human_uses_of_bats

Bat as food. Wikipedia. Last edited 7 days ago by Enwebb.

https://en.m.wikipedia.org/wiki/Bat_as_food

# gst: NS3, how viruses self-cripple their genome replication machinery

<< An interdisciplinary team of researchers (..) has used computational chemistry, biochemistry and virology to uncover new information on how viruses such as West Nile, dengue and Zika replicate. Based on their research, the team said these viruses appear to cripple their own genome replication machinery.  >>

<< Nonstructural Protein 3 - or NS3 - in flaviviruses, (..) cause a number of diseases in humans. NS3 is a key enzyme that these viruses use to copy their genomes. >>

<< Most vaccines are developed by finding random mutations that slow down virus growth, (..) By understanding how viral enzymes like NS3 work in great detail, we can use that information to rationally design new mutant viruses that replicate less well and act better as a vaccine, without having to rely on chance to make the vaccine. This can help develop vaccines more rapidly and precisely. >> Brian Geiss.

New details on how a viral protein puts the brakes on virus replication. Colorado State University.  Feb 7, 2020.

https://m.phys.org/news/2020-02-viral-protein-virus-replication.html

Kelly E. Du Pont, Russell B. Davidson,  et al. Motif V regulates energy transduction between the flavivirus NS3 ATPase and RNA-binding cleft. The Journal of Biological Chemistry 295, 1551-1564. Feb 7, 2020.

http://m.jbc.org/content/295/6/1551

Also

keyword 'NS3 enzyme' in ncbi

https://www.ncbi.nlm.nih.gov/m/pubmed/?term=NS3+enzyme