# life: apropos of interactions, “attacks” and “circling” of Zebrafish in the dynamics of dominance.

<< While two-body fighting behavior occurs throughout the animal kingdom to settle dominance disputes, important questions such as how the dynamics ultimately lead to a winner and loser are unresolved. Here (AA) examine fighting behavior at high resolution in male zebrafish. >>️

<< In the body point trajectories (AA) find a spectrum of timescales which (they) use to build informative joint coordinates consisting of relative orientation and distance. (AA) use the distribution of these coordinates to automatically identify fight epochs, and (then) demonstrate the postfight emergence of an abrupt asymmetry in relative orientations—a clear and quantitative signal of hierarchy formation. >>

AA << identify short-time, multi-animal behaviors as clustered transitions between joint configurations, and show that fight epochs are spanned by a subset of these clusters, which (they) denote as maneuvers. The resulting space of maneuvers is rich but interpretable, including motifs such as “attacks” and “circling.” In the longer-time dynamics of maneuver frequencies (AA) find differential and changing strategies, including that the eventual loser attacks more often towards the end of the contest. >>️

AA << results suggest a reevaluation of relevant assessment models in zebrafish, while our approach is generally applicable to other animal systems. >>️

️

Liam O'Shaughnessy, Tatsuo Izawa, et al. Dynamics of Dominance in Interacting Zebrafish. PRX Life 2, 043006. Oct 25, 2024.

https://journals.aps.org/prxlife/abstract/10.1103/PRXLife.2.043006

Also: behav, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, behavior, behaviour

# gst: fluid stretching and compression to control (chemical) waves

<< Oscillatory kinetics coupled to diffusion can produce traveling waves as observed in physical, chemical, and biological systems. (AA) show experimentally that the properties of such waves can be controlled by fluid stretching and compression in a hyperbolic flow. >>

️

<< Localized packet waves consisting in a train of parallel waves can develop due to a balance between diffusive broadening and advective compression along the unstable manifold. At a given distance from the stagnation point, the parallel waves transform into planelike waves and smeared waves where the transverse parabolic flow profile disturbs the patterns in the gap width. >> 

<< Once a wave packet has been obtained, it imprints a privileged direction that is maintained even if the compression rate is decreased. The width of the wave packet then scales inversely with the compression rate. >>️

S. Izumoto, D. M. Escala, et al. Control of Chemical Waves by Fluid Stretching and Compression. Phys. Rev. Lett. 133, 218001. Nov 21, 2024. 

https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.133.218001

Also: waves, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, waves

# gst: when a pseudo pyramid cyclically flips; (lab) icebergs melt down and flip out

AA << study laboratory-scale icebergs that freely float and melt, where direct visualizations show interesting and interconnected changes in the shape of the ice, its posture, and the flows of the surrounding water. >>️

<< Ice in nature is dynamic at all scales, from glacial sheets that deform and flow to icebergs that melt down and capsize. For the latter, much of the ice and much of the action is unseen beneath the surface. >>️

<< Here (AA) study laboratory-scale icebergs that freely float and melt, where direct visualizations show interesting and interconnected changes in the shape of the ice, its posture, and the flows of the surrounding water. >>️

Bobae Johnson, Zihan Zhang, et al. Lab icebergs melt down and flip out. Phys. Rev. Fluids 9, 110510. Nov 22, 2024.

https://journals.aps.org/prfluids/abstract/10.1103/PhysRevFluids.9.110510

Bobae Johnson, Steven Zhang, et al. P0011: Lab icebergs melt down and flip out. 76th Annual Meeting of the APS Division of Fluid Dynamics. Nov 19-21, 2023. 

https://gfm.aps.org/meetings/dfd-2023/64fb5761199e4c7f75b63ef7

Also: transition, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, transition

# evol: nomads, a whole story of human evolution.

<< In pursuit of knowledge, the evolution of humanity ranks with the origins of life and the universe. And yet, except when an exciting find hits the headlines, palaeoanthropology and its related fields have gained far less scientific support and funding – particularly for scientists and institutions based in the African countries where so many landmark discoveries have occurred. >>️

<< Even the term “human” is arguable. Many scholars reserve it for modern humans like us, even though we have Neanderthal genes and they shared at least 90% of our hominin history from its beginnings around 8 million years ago. The essence of hominin evolution ever since has been gradual change, with occasional rapid phases. The record of evolution in our own genus, Homo, is already full enough to show we cannot separate ourselves with hard lines. >>️

<< Nonetheless, there is enough consensus to thread the story of human evolution all the way from early apes to modern humanity. Most of this story centres on Africa, of course, where countries such as Kenya, South Africa and Ethiopia are rightly proud of their heritage as “cradles of humankind” – providing many of their schoolchildren with a much fuller answer then those in the west to this deceptively simple question: how did we get here? >>️

John Gowlett. The whole story of human evolution – from ancient apes via Lucy to us – in one long read. theconversation.com. Nov 25, 2024.

https://theconversation.com/the-whole-story-of-human-evolution-from-ancient-apes-via-lucy-to-us-in-one-long-read-243960

Also: Nomads, evolution, in https://www.inkgmr.net/kwrds.html 

Keywords: Nomads, evolution

# gst: apropos of dances, drops that dance following snake- and ouroboros-shaped trajectories on lubricated surfaces.

<< Recently, (AA) observed a curious breath figure pattern when water condenses on solid surfaces coated with a thin lubricant oil film. Water drops of various sizes, ranging from tens of microns to several millimetres, start to perform a self-avoiding, serpentinelike dance. As the drop moves, it consumes smaller droplets along its path, converting interfacial energy into kinetic energy to sustain its motion. These self-avoiding drops preferentially avoid crossing their own paths as well as the paths of other drops; they can only intersect their previous paths once sufficient recondensation has occurred. This self-avoiding behavior arises because the previous path (..) contains little to no water content to fuel self-propulsion, so the drops continually seek areas with higher local water content. >>️

<< This intricate serpentine dance is driven by short-range interactions between droplets, mediated by overlapping menisci, similar to the Cheerios effect. Remarkably, long-range order spontaneously emerges from these short-range interactions, with the collective motion exhibiting self-similarity—breath figure patterns appear roughly similar across different scales. >>

<< The serpentine motions of the drops, which can span distances many times their diameters, eventually deplete the local lubricant film, causing a transition from serpentine to circular motion. This circular motion can be seen as a unique form of serpentine motion occurring in lubricant-poor regions. As the drops move, they continually redistribute the lubricant across the substrate, leading to a dynamic interplay between serpentine and circular motions. This ongoing redistribution can be visualized by illuminating the surface with diffused white light and capturing the resulting interference patterns with a digital camera. Variations in lubricant thickness produce different hues, creating a vibrant, colorful canvas and an intricate dance floor for the condensing drops. >>️

<< The phenomenon described in (AA) paper represents a fascinating example of active matter driven by condensation, rather than the more commonly observed chemical reactions or Marangoni effects. >>

Marcus Lin, Fauzia Wardani, Dan Daniel. Dancing drops on lubricated surfaces. Phys. Rev. Fluids 9, 110504. Nov 22, 2024.

https://journals.aps.org/prfluids/abstract/10.1103/PhysRevFluids.9.110504

Marcus Lin, Solomon Adera, Joanna Aizenberg, Yao Xi, Dan Daniel. V0030: Serpents and Ouroboros: Emergent collective motion of condensate droplets. 76th Annual Meeting of the APS Division of Fluid Dynamics. Nov 19-21, 2023.

https://gfm.aps.org/meetings/dfd-2023/64ff56f3199e4c1bbe725834

Also: drop, droplet, droploid, dance, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, drop, droplet, droploid, dance

# gst: protected chaos in a topological lattice.

<< The erratic nature of chaotic behavior is thought to erode the stability of periodic behavior, including topological oscillations. However, (AA) discover that in the presence of chaos, non-trivial topology not only endures but also provides robust protection to chaotic dynamics within a topological lattice hosting non-linear oscillators. >>

<< Despite the difficulty in defining topological invariants in non-linear settings, non-trivial topological robustness still persists in the parametric state of chaotic boundary oscillations. (AA) demonstrate this interplay between chaos and topology by incorporating chaotic Chua's circuits into a topological Su-Schrieffer-Heeger (SSH) circuit. >>

<< By extrapolating from the linear limit to deep into the non-linear regime, (AA) find that distinctive correlations in the bulk and edge scroll dynamics effectively capture the topological origin of the protected chaos. (Their)  findings suggest that topologically protected chaos can be robustly achieved across a broad spectrum of periodically-driven systems, thereby offering new avenues for the design of resilient and adaptable non-linear networks. >>️

Haydar Sahin, Hakan Akgün, et al. Protected chaos in a topological lattice. arXiv: 2411.07522v1 [cond-mat.mes-hall]. Nov 12, 2024.

https://arxiv.org/abs/2411.07522

Also: chaos, random, instability, transition, network, ai (artificial intell), in https://www.inkgmr.net/kwrds.html 

Keywords: gst, chaos, random,  instability, transition, network, AI, Artificial Intelligence

# gst: self-organized target wave chimeras from asynchronous oscillators in reaction-diffusion media

<< An important development in nonlinear dynamics is the discovery of chimera states that represent the coexistence of synchronized and desynchronized activity in populations of identically coupled oscillators. >>

 Here, AA << unveil a novel chimera state called “self-organized target wave chimera” in reaction-diffusion media where synchronized target waves spontaneously emerge from a pacemaker composed of asynchronous oscillators. This regime contrasts with a widely accepted perspective that synchronized target waves can be generated only by the individuals, which comprise the pacemaker, behaving in a synchronized manner. >>

AA << characterize the features of self-organized target wave chimeras and present a phase diagram of existence of such a regime. >>

Bing-Wei Li, Jie Xiao, et al. Self-Organized Target Wave Chimeras in Reaction-Diffusion Media. Phys. Rev. Lett. 133, 207203. Nov 15, 2024. 

https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.133.207203

Also: chimera, self-assembly, waves, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, chimera, self-assembly, waves, self-organized target wave chimera, asynchronous oscillators

# gst: singular bifurcations, an approach

<< Bifurcation analysis is traditionally based on the assumption of a regular perturbative expansion, close to the bifurcation point, in terms of a variable describing the passage of a system from one state to another. However, it is shown that a regular expansion is not the rule due to the existence of hidden singularities in many models, paving the way to a new paradigm in nonlinear science, that of singular bifurcations. The theory is first illustrated on an example borrowed from the field of active matter (phoretic microswimers), showing a singular bifurcation. >>

AA << then present a universal theory on how to handle and regularize these bifurcations, bringing to light a novel facet of nonlinear sciences that has long been overlooked. >>️

Alexander Farutin, Chaouqi Misbah. Singular bifurcations and regularization theory. Phys. Rev. E 109, 064218. Jun 27, 2024. 

https://journals.aps.org/pre/abstract/10.1103/PhysRevE.109.064218

Alexander Farutin, Chaouqi Misbah. Singular Bifurcations : a Regularization Theory. arXiv: 2112.12094v2 [cond-mat.soft]. Jan 6, 2022. 

https://arxiv.org/abs/2112.12094 

Also: transition, singularity, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, transition, singularity, bifurcation

# gst: pulse-to-crack transition, unsteady slip pulses under spatially-varying prestress scenarios.

AA << study the effects of a spatially-varying prestress τb(x) on 2D slip pulses, initially generated under a uniform τb along a rate-and-state friction fault. (They) consider periodic and constant-gradient prestress τb(x) around the reference uniform τb. For a periodic τb(x), pulses either sustain and form quasi-limit cycles in the L−c plane or decay predominantly monotonically along the L(c) line, depending on the instability index of the initial pulse and the properties of the periodic τb(x).  >>️

<< For a constant-gradient τb(x), expanding/decaying pulses closely follow the L(c) line, with systematic shifts determined by the sign and magnitude of the gradient. (They) also find that a spatially-varying τb(x) can revert the expanding/decaying nature of the initial reference pulse.  >>

<< Finally, (AA) show that a constant-gradient τb(x), of sufficient magnitude and specific sign, can lead to the nucleation of a back-propagating rupture at the healing tail of the initial pulse, generating a bilateral crack-like rupture. This pulse-to-crack transition, along with the above-described effects, demonstrate that rich rupture dynamics merge from a simple, nonuniform prestress. >>️️

Anna Pomyalov, Eran Bouchbinder. Unsteady slip pulses under spatially-varying prestress. arXiv: 2407.21539v1 [cond-mat.mtrl-sci]. Jul 31, 2024.

https://arxiv.org/abs/2407.21539

Also: transition, instability, crack, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, transition, instability, crack 

# gst: apropos of transverse instabilities, from chimeras to extensive chaos

<< Populations of coupled oscillators can exhibit a wide range of complex dynamical behavior, from complete synchronization to chimera and chaotic states. We can thus expect complex dynamics to arise in networks of such populations. >>️

Here AA << analyze the dynamics of networks of populations of heterogeneous mean-field coupled Kuramoto-Sakaguchi oscillators, and show that the instability that leads to chimera states in a simple two-population model also leads to extensive chaos in large networks of coupled populations. >>️

Pol Floriach, Jordi Garcia-Ojalvo, Pau Clusella. From chimeras to extensive chaos in networks of heterogeneous Kuramoto oscillator populations. arXiv: 2407.20408v2 [nlin.CD]. Oct 11, 2024.

https://arxiv.org/abs/2407.20408

Also: chimera, instability, chaos, network, in 

https://www.inkgmr.net/kwrds.html 

Keywords: gst, chimera, instability, chaos, network

# gst: apropos of bubbles, the case of bubbles collapsing near a wall.

AA << study examines the pressure exerted by a cavitation bubble collapsing near a rigid wall. A laser-generated bubble in a water basin undergoes growth, collapse, second growth, and final collapse. Shock waves and liquid jets from non-spherical collapses are influenced by the stand-off ratio γ, defined as the bubble centroid distance from the wall divided by the bubble radius. (AA) detail shock mechanisms, such as tip or torus collapse, for various γ values. High-speed and Schlieren imaging visualize the microjet and shock waves. The microjet's evolution is tracked for large γ, while shock waves are captured in composite images showing multiple shock positions. Quantitative analyses of the microjet interface, shock wave velocities, and impact times are reported. Wall-mounted sensors and a needle hydrophone measure pressure and compare with high-speed observations to assess the dominant contributions to pressure changes with γ, revealing implications for cavitation erosion mechanisms. >>️

Roshan Kumar Subramanian, Zhidian Yang, et al. Bubble collapse near a wall. Part 1: An experimental study on the impact of shock waves and microjet on the wall pressure. arXiv: 2408.03479v2 [physics.flu-dyn]. Aug 8, 2024. 

https://arxiv.org/abs/2408.03479

Also: bubble, drop, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, bubble, bubble collapse 

# life: don't worry folks! Mr Donald will not run again in 2028. Anzicheforse?

<< In September, Donald Trump said he would run for president again in 2028 if he didn't win this week's general election. >>️

<< But on Tuesday, Donald Trump won the vote to become the 47th president of the United States. So, can he still run for office in 2028? >>️

<< And just a few months before that, at the NRA's annual meeting in May, Trump mentioned running for a third term. >>️

<< Here's what to know about term limits and if Trump can run for president a third time, now that he's won twice. >>

<< The 22nd Amendment to the Constitution ... >>️️

Lianna Norman, Joyce Orlando. Can Trump run for president again in 2028? Here’s what to know about term limits. USA TODAY NETWORK, Florida. Nov 7, 2024. 

https://eu.floridatoday.com/story/news/2024/11/07/trump-run-again-term-limits-22nd-amendment-constitution/76087581007/

Also: Mr. Donald, in https://www.inkgmr.net/kwrds.html 

Keywords: life, Donald, potus, potus race

# gst: phase transitions in anisotropic turbulence.

<<  

Turbulence is a widely observed state of fluid flows, characterized by complex, nonlinear interactions between motions across a broad spectrum of length and time scales. While turbulence is ubiquitous, from teacups to planetary atmospheres, oceans and stars, its manifestations can vary considerably between different physical systems. For instance, three-dimensional (3D) turbulent flows display a forward energy cascade from large to small scales, while in two-dimensional (2D) turbulence, energy cascades from small to large scales. In a given physical system, a transition between such disparate regimes of turbulence can occur when a control parameter reaches a critical value. The behavior of flows close to such transition points, which separate qualitatively distinct phases of turbulence, has been found to be unexpectedly rich. Here, (AA) survey recent findings on such transitions in highly anisotropic turbulent fluid flows, including turbulence in thin layers and under the influence of rapid rotation. (They) also review recent work on transitions induced by turbulent fluctuations, such as random reversals and transitions between large-scale vortices and jets, among others. The relevance of these results and their ramifications for future investigations are discussed.

>>️

Adrian van Kan. Phase Transitions in Anisotropic Turbulence. arXiv: 2408.02844v1 [physics.flu-dyn]. Aug 5, 2024. 

https://arxiv.org/abs/2408.02844

Also:  turbulence, vortex, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, turbulence, vortex

# brain: mosaic evolution of a learning and memory circuit in Heliconiini butterflies.

<< A species of tropical butterfly with unusually expanded brain structures display a fascinating mosaic pattern of neural expansion linked to a cognitive innovation. >>

<< The study (..) investigates the neural foundations of behavioural innovation in Heliconius butterflies, the only genus known to feed on both nectar and pollen. As part of this behaviour, they demonstrate a remarkable ability to learn and remember spatial information about their food sources—skills previously connected to the expansion of a brain structure called the mushroom bodies, responsible for learning and memory. >>️

Butterfly brains reveal the tweaks required for cognitive innovation. University of Bristol. Oct 18, 2024. 

https://www.bristol.ac.uk/news/2024/october/butterfly-brains.html

Max S. Farnworth, Theodora Loupasaki, et al. Mosaic evolution of a learning and memory circuit in Heliconiini butterflies. Curr. Biol. doi: 10.1016/ j.cub.2024.09.069. Oct 18, 2024. 

https://www.cell.com/current-biology/fulltext/S0960-9822(24)01337-X

Also: brain, evolution, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, brain, evolution

# gst: taming uncertainty, a tutorial by NaN et Al.

<< All models are wrong, but some are useful. >>. George Box. ️

Nan Chen, Stephen Wiggins, Marios Andreou. Taming Uncertainty in a Complex World: The Rise of Uncertainty Quantification - A Tutorial for Beginners. arXiv: 2408.01823v1 [math.DS]. Aug 3, 2024. 

https://arxiv.org/abs/2408.01823

Also: NaN 'Not a Number'. In: Onda pneica. Apr 10, 2005 (quasi-stochastic poetry) https://inkpi.blogspot.com/2005/04/1694b-onda-pneica.html ;  nan(). In: Linux manual. https://www.man7.org/linux/man-pages/man3/nanf.3.html

Also: << Amico, qualunque  cosa suonerai . . . >>. Jelly Roll Morton. In: Soniche a ramulo. Jan 28, 2007 (quasi-stochastic poetry). https://inkpi.blogspot.com/2007/01/2113-soniche-ramulo.html  

Also: uncertainty, Mr. Jelly Roll Morton, jazz, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, uncertainty, Jelly Roll, jazz

# life: Potus race, Kamala knows her jazz

<< a video showing Harris emerging from a record store in Washington DC has recently gained massive traction on social media. The footage, taken in May 2023, shows her engaging with journalists while displaying and talking about the records she had purchased. This video clip was notably shared and reposted among the European jazz community – not people you’d necessarily think would be hugely interested in the musical tastes of US presidential candidates. >>

<< Harris’s purchases included three classic jazz albums by notable African American artists: Charles Mingus’s 1972 album Let My Children Hear Music, Roy Ayers’ 1976 Everybody Loves the Sunshine, and the 1959 collaboration of Ella Fitzgerald and Louis Armstrong on Porgy and Bess. >>️

<< Liking and knowing jazz, in some circles at least, suggests sophistication, intellectualism, and a leaning towards advocacy for cultural unity through diversity. The improvisational and creative elements found in jazz might also translate to a degree of flexibility in her politics. >>

<< The love of music is not necessarily an electoral strategy. But it would be interesting to find out which approach resonates most with voters ahead of the coming US election: scattergun and with no particular demographic focus, or targeted and consistent. >>

Haftor Medbøe, Jose Dias. US election 2024: Kamala Harris knows her jazz – why this could count with voters. theconversation.com. Aug 9, 2024.

https://theconversation.com/us-election-2024-kamala-harris-knows-her-jazz-why-this-could-count-with-voters-236344

Also: jazz, RAG-time, in https://www.inkgmr.net/kwrds.html 

Keywords: life, potus, potus race, jazz, RAG-time

# gst: apropos of noise-assisted phenomena, self-organized transport in noisy dynamic networks.

AA << present a numerical study of multicommodity transport in a noisy, nonlinear network. The nonlinearity determines the dynamics of the edge capacities, which can be amplified or suppressed depending on the local current flowing across an edge. (AA) consider network self-organization for three different nonlinear functions: For all three (They) identify parameter regimes where noise leads to self-organization into more robust topologies, that are not found by the sole noiseless dynamics. Moreover, the interplay between noise and specific functional behavior of the nonlinearity gives rise to different features, such as (i) continuous or discontinuous responses to the demand strength and (ii) either single or multistable solutions. (AA) study shows the crucial role of the activation function on noise-assisted phenomena. >>️

Frederic Folz, Kurt Mehlhorn, Giovanna Morigi. Self-organized transport in noisy dynamic networks. Phys. Rev. E 110, 044310. Oct 21, 2024. 

https://journals.aps.org/pre/abstract/10.1103/PhysRevE.110.044310

Also: network, noise, behavior, self-assembly, instability, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, network, noise, behavior, self-assembly, stability 

# gst: monitoring of stable crack growth; crack tip behavior at the nanoscale (during ceramic fracture).

<< To understand fracture and make brittle materials more ductile, (AA) rely on modeling what happens at a crack tip. However, observing a crack tip in a brittle material is challenging: cracks propagate fast, and the events that (AA) are interested in observing occur at the nanoscale or below. Up to now, (They) were not able to observe what happens ahead of a moving crack tip. >>

<< In this work, (AA) show how by carefully performing fracture experiments inside a transmission electron microscope (They) can grow stable cracks while observing the nanoscale events happening at the crack tip. >>️

Oriol Gavalda-Diaz, Max Emmanuel, et al. Observing the crack tip behavior at the nanoscale during fracture of ceramics. PNAS. 121 (43) e2408292121. Oct 17, 2024.

https://www.pnas.org/doi/10.1073/pnas.2408292121 

Also: fracture, crack, behav in https://www.inkgmr.net/kwrds.html 

Keywords: gst, fracture, crack, behavior