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Visualizzazione post con etichetta self-assembly. Mostra tutti i post
Visualizzazione post con etichetta self-assembly. Mostra tutti i post

sabato 2 novembre 2024

# gst: apropos of noise-assisted phenomena, self-organized transport in noisy dynamic networks.

AA << present a numerical study of multicommodity transport in a noisy, nonlinear network. The nonlinearity determines the dynamics of the edge capacities, which can be amplified or suppressed depending on the local current flowing across an edge. (AA) consider network self-organization for three different nonlinear functions: For all three (They) identify parameter regimes where noise leads to self-organization into more robust topologies, that are not found by the sole noiseless dynamics. Moreover, the interplay between noise and specific functional behavior of the nonlinearity gives rise to different features, such as (i) continuous or discontinuous responses to the demand strength and (ii) either single or multistable solutions. (AA) study shows the crucial role of the activation function on noise-assisted phenomena. >>️

Frederic Folz, Kurt Mehlhorn, Giovanna Morigi. Self-organized transport in noisy dynamic networks. Phys. Rev. E 110, 044310. Oct 21, 2024. 

Also: network, noise, behavior, self-assembly, instability, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, network, noise, behavior, self-assembly, stability 


lunedì 14 ottobre 2024

# gst: apropos of fluctuations, an unconventional approach to (fuzzy) morphogenesis

AA << propose an unconventional mechanism where stochastic fluctuations drive the emergence of morphological patterns. >>️

In this approach << the inherent fluctuations determine the nature of the dynamics and are not incidental noise in the background of the otherwise deterministic dynamics. Instead, they play an important role as a driving force that defines the attributes of the pattern formation dynamics and the nature of the transition itself.  >>️

Oded Agam and Erez Braun. Fluctuation-driven morphological patterning: An unconventional approach to morphogenesis. Phys. Rev. Research 6, 043027. Oct 10, 2024.

Also: disorder & fluctuations, self-assembly, metamorphosis, transition, noise, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, disorder, fluctuations,  self-assembly, metamorphosis, transition, noise


martedì 23 gennaio 2024

# gst: self-repelling species could self-organize.

<< Catalytically active particles form clusters when they respond not only to their own chemical targets but to those of other catalysts, too. >>️

AA  << show that the phenomenon of self-organization depends strongly on the network topology. >>️

They << modeled a three-species system (..) systems where each species responds chemotactically only to its own substrate cannot self-organize unless one species is self-attracting. >>️

<< Next, they developed a model that allowed species to respond to both their substrates and their products. Pair interactions between different species in this more complex model drove an instability that spread throughout the three-species system, causing the catalysts to clump together. Surprisingly, this self-organization process occurred even among particles that were individually self-repelling. >>️

Rachel Berkowitz. Self-Repelling Species Still Self-Organize. Physics 16, s128. Sept 19, 2023. 

Vincent Ouazan-Reboul, Ramin Golestanian, Jaime Agudo-Canalejo. Network effects lead to self-organization in metabolic cycles of self-repelling catalysts. Phys. Rev. Lett. 131, 128301. Sep 19, 2023. 

Also: self-assembly, network, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, self-assembly, network,  topology.


giovedì 18 gennaio 2024

# gst: pseudo epileptic seizures in self-organized bistability

<< Self-organized bistability (SOB) stands as a critical behavior for the systems delicately adjusting themselves to the brink of bistability, characterized by a first-order transition. >>️

(AA) << embark on a theoretical exploration that extends the boundaries of the SOB concept on a higher-order network (implicitly embedded microscopically within a simplicial complex) while considering the limitations imposed by coupling constraints. >>️

AA << use continuous synchronization diagrams and statistical data from spontaneous synchronized events to demonstrate the crucial role SOB plays in initiating and terminating temporary synchronized events. (They) show that under weak coupling consumption, these spontaneous occurrences closely resemble the statistical traits of the epileptic brain functioning. >>
Md Sayeed Anwar, Nikita Frolov, Alexander E. Hramov, Dibakar Ghosh. Self-organized bistability on globally coupled higher-order networks. arXiv: 2401.02825v1 [nlin.AO]. Jan 5, 2024.

Also: transition, self-assembly, brain, in: https://www.inkgmr.net/kwrds.html

Keywords: gst, transition, self-assembly, bistability, self-organized bistability, brain, epileptic seizure

martedì 12 settembre 2023

# gst: tuning of Janus particles under flows

<< Active colloidal systems with nonequilibrium self-organization constitute a long-standing, challenging area in material sciences and biology. To understand how hydrodynamic flow may be used to actively control self-assembly of Janus particles (JPs), (AA)  developed a model for the many-body hydrodynamics of amphiphilic JPs suspended in a viscous fluid with imposed far-field background flows. >>

They << alter the hydrophobic distribution on the JP-solvent interface to investigate the hydrodynamics that underlies the various morphologies and rheological properties of the JP assembly in the suspension. (They) find that JPs assemble into unilamellar, multilamellar, and striated structures. >>

AA << characterize the effective material properties of the JP structures and find that the unilamellar structure increases orientation order under shear flow, the multilamellar structure behaves as a shear thinning fluid, and the striated structure possesses a yield stress. >> ️

Szu-Pei Fu, Rolf Ryham, Bryan Quaife, and Y.-N. Young. Effects of tunable hydrophobicity on the collective hydrodynamics of Janus particles under flows. Phys. Rev. Fluids 8, 050501. May 11, 2023.


Also: particle, self-assembly, in: https://www.inkgmr.net/kwrds.html

Keywords: particles, Janus, Janus particles, self-organization, self-assembly


venerdì 18 agosto 2023

# gst: emergence of self-organizing zigzag patterns among (magnetic) particles suspended in a liquid


<< When molecules or bacteria organize into a long-range pattern, researchers want to understand how the microscopic interactions lead to the macroscopic order. (AA) observed such self-organization in magnetic particles suspended in a liquid and subjected to an oscillating magnetic field. Through experiments and simulations, the team showed that the resulting zigzag pattern is explained by the fluid flow generated around the oscillating particles, not by any details of the particles or the applied field. Similar zigzag patterns have also been seen in charged colloids subjected to oscillating electric fields, so the explanation may cover a range of particle systems. The researchers also believe that understanding and controlling the effect could lead to useful applications in microfluidics devices. >>️

David Ehrenstein. Self-Organized Zigzags from Fluid Flow. Physics 16, 138. Aug 11, 2023.

Gaspard Junot, Marco De Corato, Pietro Tierno. Large Scale Zigzag Pattern Emerging from Circulating Active Shakers. Phys. Rev. Lett. 131, 068301. Aug 11, 2023. 

Also: particle, self-assembly, chiral, behav, in: https://www.inkgmr.net/kwrds.html  

Keywords: gst, behavior, particle, self-assembly, self-organization, chiral, active shakers, squirmers, alternating chirality


mercoledì 24 maggio 2023

# gst: intricate transitions in elastoactive structures.

<< The interplay between activity and elasticity often found in active and living systems triggers a plethora of autonomous behaviors ranging from self-assembly and collective motion to actuation. Among these, spontaneous self-oscillations of mechanical structures is perhaps the simplest and most widespread type of nonequilibrium phenomenon. >>️

<< Here, (AA) introduce a centimeter-sized model system for one-dimensional elastoactive structures. >>️

<< such structures exhibit flagellar motion when pinned at one end, self-snapping when pinned at two ends, and synchronization when coupled together with a sufficiently stiff link. (..) these transitions can be described quantitatively by simple models of coupled pendula with follower forces. >>️

Ellen Zheng, Martin Brandenbourger, et al. Self-Oscillation and Synchronization Transitions in Elastoactive Structures. Phys. Rev. Lett. 130, 178202. April 25, 2023. 

Also:  transition, particle, self-assembly, elastic, pendulum in https://www.inkgmr.net/kwrds.html

Keywords: gst, transition, particle, self-assembly, elastic, pendulum


lunedì 24 aprile 2023

# gst: emergent organization and polarization due to active fluctuations.


AA << introduce and study a model of active Brownian motion with multiplicative noise describing fluctuations in the self-propulsion or activity. (They) find that the standard picture of density accumulation in slow regions is qualitatively modified by active fluctuations, as stationary density profiles are generally not determined only by the mean self-propulsion speed landscape. As a result, activity gradients generically correlate the particle self-propulsion speed and orientation, leading to emergent polarization at interfaces pointing either towards dense or dilute regions depending on the amount of noise in the system.  >>
Benoit Mahault, Prakhar Godara, Ramin Golestanian. Emergent organization and polarization due to active fluctuations. Phys. Rev. Research 5, L022012. April 12, 2023. 

Also: 'particle', 'fluctuations', 'noise', 'self-assembly' in https://www.inkgmr.net/kwrds.html

Keywords: gst, particle, organization, polarization, fluctuations, noise, self-propulsion, self-assembly 



venerdì 7 aprile 2023

# gst: packing in slender structures, the geometry of squeezed elastic beams


<< The behavior of a collection of squeezed elastic beams is determined by geometry, not by complex forces. >>️

Dan Garisto. How Order Emerges in Bendy Beam Bunches. Physics 16, 54. Apr 3, 2023.

<< A collection of thin structures buckle, bend, and bump into each other when confined. This contact can lead to the formation of patterns: hair will self-organize in curls; DNA strands will layer into cell nuclei; paper, when crumpled, will fold in on itself, forming a maze of interleaved sheets. This pattern formation changes how densely the structures can pack, as well as the mechanical properties of the system. >>️

<< Here (AA) study the emergence of order in a canonical example of packing in slender structures, i.e., a system of parallel confined elastic beams. >>️

They << find that the compressive stiffness and stored bending energy of this metamaterial are directly proportional to the number of beams that are geometrically frustrated at any given point.  >>
Arman Guerra, Anja C. Slim, et al. Self-Ordering of Buckling, Bending, and Bumping Beams. Phys. Rev. Lett. 130, 148201. Apr 3, 2023.

Also

keyword 'self-assembly' in FonT

keyword 'elastic' in FonT

keyword 'elastico' in Notes
(quasi-stochastic poetry)

Keywords: gst, self-assembly, beams, buckling, bending, bumping, elasticity





sabato 21 gennaio 2023

# chem: spontaneous reconfiguration of deformable nanoparticles (in response to environmental cues)


<< Deformable nanoparticles (NPs) offer unprecedented opportunities as dynamic building blocks that can spontaneously reconfigure during assembly in response to environmental cues. >>

<< deformable spherical NPs of radius 50 nm whose surface is tailored with octahedrally distributed charged patches and double-cap charged patches adapt their shape differently in response to changes in surface charge coverage and ionic strength. >>

AA << find shape transitions to rounded octahedra, faceted octahedra, faceted bowls, oblate spheroids, spherocylinders, dented beans, and dimpled rounded bowls. >>

AA << demonstrate that similar shape transitions can be achieved in deformable NPs of different sizes. >>️

Fanbo Sun, Nicholas E. Brunk, Vikram Jadhao. Shape control of deformable charge-patterned nanoparticles. Phys. Rev. E 107, 014502. Jan 10, 2023.


Also

keyword 'self-assembly' in FonT


keyword 'nano' in FonT


keyword 'nano' in Notes 
(quasi-stochastic poetry)


Keywords: chem, nano, nanoparticles,  NPs, self-assembly, colloids, polymers, vesicle structures.


sabato 13 agosto 2022

# gst: how a synchronization could emerge from chaotic activities

<< Can we find order in chaos? Physicists have shown, for the first time that chaotic systems can synchronize due to stable structures that emerge from chaotic activity. These structures are known as fractals, shapes with patterns which repeat over and over again in different scales of the shape. As chaotic systems are being coupled, the fractal structures of the different systems will start to assimilate with each other, taking the same form, causing the systems to synchronize. >>️

<< If the systems are strongly coupled, the fractal structures of the two systems will eventually become identical, causing complete synchronization between the systems. These findings help us understand how synchronization and self-organization can emerge from systems that didn't have these properties to begin with, like chaotic systems and biological systems. >>️

Topological synchronization of chaotic systems. Bar-Ilan University. Apr 22, 2022. 

<< chaotic synchronization has a specific trait in various systems, from continuous systems and discrete maps to high dimensional systems: synchronization initiates from the sparse areas of the attractor, and it creates what (AA) termed as the ‘zipper effect’, a distinctive pattern in the multifractal structure of the system that reveals the microscopic buildup of the synchronization process. >>️

Lahav, N., Sendina-Nadal, I., et al. Topological synchronization of chaotic systems. Sci Rep 12, 2508. doi: 10.1038/ s41598-022-06262-z. Feb 15, 2022. 

Also

keyword 'self-assembly' in FonT


Keywords: gst, self-assembly, self-organization, fractals, topological synchronization, zipper effect, chaos, chaotic systems







venerdì 13 maggio 2022

# evol: spontaneous, immediate asymmetry, the chiral twist


<< When holding a right hand in front of a mirror, one can see a reflected image of a left hand and vice versa. In 1848, Louis Pasteur discovered that organic molecules are much like our hands: they come in mirror-image pairs of left- and right-handed variants. Nowadays, we know that this handedness or chirality (from the Greek word for "hand") is a hallmark of organic molecules. >>

<< Organic molecules are rich in carbon atoms, which form bonds to create either a right or a left "nano-hand." Yet, puzzlingly, life almost always selects to exclusively use one of the two mirror-image twins—a phenomenon called homochirality. For example, terrestrial life is based on left-handed amino acids and right-handed sugars. >>️️

<< A model now proposes a novel explanation for the emergence of homochirality in life—a longstanding puzzle about the origin of life on Earth. >>️

<< Homochirality emerges spontaneously in prebiotic chemical networks that adapt to optimize energy harvesting from the environment. Previously, it was believed that chiral symmetry breaking requires multiple loops of auto-catalysis, which increasingly produces one enantiomer of a molecule while inhibiting the formation of the other. However, the IBS team's results showed that the underlying mechanism of symmetry breaking is very general, as it can occur in large reaction systems with many random molecules and does not require sophisticated network architectures. It was found that this sharp transition to homochirality stems from the self-configuration of the reaction network in order to achieve more efficient harvesting of energy from the environment. >>️

Learning chemical networks give life a chiral twist. Institute for Basic Science. Apr 26, 2022. 


William D. Pineros, Tsvi Tlusty. Spontaneous chiral symmetry breaking in a random driven chemical system. Nat Commun 13, 2244. doi: 10.1038/ s41467-022-29952-8. Apr 26, 2022.


Also



Keywords: evolution, gst, randomness, self-assembly, self-configuration, break symmetry, asymmetry, chiral, chirality  




giovedì 8 ottobre 2020

# gst: observing the crystallization process in a droplet

<< Crystallization is the assembly of atoms or molecules into highly ordered solid crystals, which occurs in natural, biological, and artificial systems. However, crystallization in confined spaces, such as the formation of the protein shell of a virus, is poorly understood. Researchers are trying to control the structure of the final crystal formed in a confined space to obtain crystals with desired properties, which requires thorough knowledge of the crystallization process. >>

AA << used a droplet of a colloid—a dispersion of liquid particles in another liquid, like milk—as a model for single atoms or molecules in a sphere. Unlike single atoms or molecules, which are too small to easily observe, the colloid particles were large enough to visualize using a microscope. This allowed the researchers to track the ordering of single particles in real time during crystallization. >>

<< We visualized the organization process of colloid particles in numerous droplets under different conditions to provide a picture of the crystallization process in a sphere, >> Peng Tan

<< Based on their observations, the team proposed that the crystallization process involved three stages: initial ordering on the surface "skin" of the droplet, nucleation and growth in the core of the droplet, and then slow ripening of the whole structure. First, a skin consisting of a single layer of ordered colloid particles rapidly formed on the droplet surface. Next, crystallization occurred in the core of the droplet, far from the crystallized skin. The competition between crystallization in these two regions controlled the structure of the final crystal. The researchers found that the "soft" (long-range) interactions between the negatively charged colloid particles affected their organization and the resulting crystal structure. These soft interactions are dominated by kinetics, that is, the interactions that form the fastest, rather than those that use the least energy to give the thermodynamically stable structure, illustrating that kinetics plays an important role in crystallization in a confined space. It was already known that thermodynamics contributes strongly to the final structure of crystals. >>

Having a ball: Crystallization in a sphere. University of Tokyo. Sep 21, 2020.


Chen Y., Yao Z., et al. Morphology selection kinetics of crystallization in a sphere. Nat. Phys. doi: 10.1038/ s41567-020-0991-9. Sep 21, 2020.


Also

Control of material crystallization by agitation. Osaka University. Jun 08, 2017.


keyword 'drop' or 'droplet' in FonT





venerdì 28 agosto 2020

# gst: self-assembly of chemistry with music

<< audible sound can control chemical reactions in solution by continuously supplying energy sources into the interface between air and the solution.  The sound-controlled air-liquid chemical interactions 'painted' intriguing and aesthetic patterns on the surface and bulk of the solution.>>

<< The Pied Piper of Hamelin tells the mythological story of a pied piper who lured rats away from the city of Hamelin by enchanting them with the music from his magical pipe. With music working like a fuel for such artistic control in chemistry, our study has shown that even synthetic molecules can exhibit life-like behavior—listening and following a musical track, >> Rahul Dev Mukhopadhyay. 

Seeing chemical reactions with music. Institute for Basic Science. Aug 10, 2020.


<< the patterns obtained from artificially designed out-of-equilibrium chemical oscillating networks (such as the Belousov–Zhabotinsky reaction for example) are unpredictable and difficult to control spatiotemporally, albeit reproducible over subsequent cycles. Here, (AA) show that it is possible to generate reproducible spatiotemporal patterns in out-of-equilibrium chemical reactions and self-assembling systems in water in the presence of sound waves, which act as a guiding physical stimulus. >>

Hwang, I., Mukhopadhyay, R.D., Dhasaiyan, P. et al. Audible sound-controlled spatiotemporal patterns in out-of-equilibrium systems. Nat. Chem. 12, 808–813 (2020). doi: 10.1038/ s41557-020-0516-2. Aug 10, 2020.




lunedì 29 giugno 2020

# gst: self-assembly in complex patterns during the evaporation of a sessile droplet

<< When a sessile droplet containing a solute in a volatile solvent evaporates, flow in the droplet can transport and assemble solute particles into complex patterns. >>

Bryan A. Nerger, P.-T. Brun, Celeste M. Nelson. Marangoni flows drive the alignment of fibrillar cell-laden hydrogels. Science Advances. Vol. 6, no. 24, eaaz7748. doi: 10.1126/ sciadv.aaz7748. Jun 12, 2020.


Thamarasee Jeewandara. Marangoni flows drive the alignment of fibrillar cell-laden hydrogels. Phys.org. Jun 25, 2020


Also

keyword 'Marangoni effect'





lunedì 22 giugno 2020

# bots: tiny machinery, nanobots (molecule-sized bots) from 1k to millions swarming together to perform tasks

<< Multi-disciplinary research has led to the innovative fabrication of molecule-sized robots. Scientists are now advancing their efforts to make these robots interact and work together in the millions. >>

AA << have made molecular robots with three key components: microtubules, single-stranded DNA, and a light-sensing chemical compound. The microtubules act as the molecular robot's motor, converting chemical energy into mechanical work. The DNA strands act as the information processor due to its incredible ability to store data and perform multiple functions simultaneously. The chemical compound, azobenzene derivative, is able to sense light, acting as the molecular robot's on/off switch. (..) (They) have successfully controlled the shape of those swarms by tuning the length and rigidity of the microtubules. Relatively stiff robots swarm in uni-directional, linear bundles, while more flexible ones form rotating, ring-shaped swarms.>>

<< A continuing challenge, though, is making separate groups of robots swarm at the same time, but in different patterns. This is needed to perform multiple tasks simultaneously. >>

Scientists working to make molecule-sized robots swarm together to perform tasks. National Institute for Materials Science. Jun 18, 2020.


Arif Md. Rashedul Kabir, Daisuke Inoue,  Akira Kakugo. Molecular swarm robots: recent progress and future challenges.  Science and Technology of Advanced Materials. 21:1, 323-332. doi: 10.1080/ 14686996.2020.1761761. Jun 16, 2020. 


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keyword 'bot' in FonT





giovedì 18 giugno 2020

# gst: critical points seem to act behind the complex behavior of collectives.

<< Current experiments support the controversial hypothesis that a well-known concept in physics—a critical point—is behind the striking behavior of collective animal systems. >>

AA << showed that light-controlled microswimming particles can be made to organize into collective states such as swarms and swirls. By studying the particles fluctuating between these states, they provide evidence for critical behavior—and support for a physical principle underlying the complex behavior of collectives.>>

<< What we observed is that the system can make sudden transitions from one state to the other, which demonstrates the flexibility needed to react to an external perturbation like a predator, (..) and provides clear evidence for a critical behavior. >> Clemens Bechinger

<< Through very simple interactions, they have shown that you can tune a physical system to a collective state - criticality - of balance between order and disorder. >> Iain Couzin

Physics principle explains order and disorder of swarms. University of Konstanz. Jun 11, 2020.


Bauerle T., Loffler R.C., Bechinger C. Formation of stable and responsive collective states in suspensions of active colloids. Nat Commun 11, 2547. doi: 10.1038/ s41467-020-16161-4. May 21, 2020.


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keyword 'self-assembly' in FonT




venerdì 24 aprile 2020

# gst: a view of multi-system self-assembly

<< a team of scientists in Turkey has demonstrated the fundamental principles of a universal self-assembly process acting on a range of materials-starting from a few atoms-large quantum dots up to nearly 100 trillion atoms-large human cells. >>

AA << not only demonstrated the self-assembly of simple as well as complex structures that are more than four orders of magnitude different in size and mass. They all come together following a sigmoid function, also known as the S-curve. Curiously, they also observed that the individual deviations from the S-curves follow the statistics of the Tracy-Widom distribution, which manifests in diverse, social, economic, and physical systems.>>

<< To initiate self-assembly, either you force the system to deliver a specific outcome, or you use its inner dynamics to your advantage for universal outcomes. We followed the second approach, >> Serim Ilday.

Scientists uncover principles of universal self-assembly. Bilkent University. Apr 20, 2020.

https://phys.org/news/2020-04-scientists-uncover-principles-universal-self-assembly.html

Ghaith Makey, Sezin Galioglu, et al. Universality of dissipative self-assembly from quantum dots to human cells. Nat. Phys. doi: 10.1038/s41567-020-0879-8. Apr 20, 2020.

https://www.nature.com/articles/s41567-020-0879-8

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keyword 'self' in Notes (quasi- stochastic poetry)

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