# gst: active drive towards elastic spinodals

<< Active matter, exemplified by adaptive living materials such as the actomyosin cytoskeleton, can navigate material parameter space, leading to unconventional mechanical responses. In particular, it can self-drive toward elastic spinodal regimes, where inhomogeneous floppy modes induce elastic degeneracy and enable a controlled interplay between rigidity loss and recovery. Proximity to such marginal states leads to stress localization and the formation of force chains that can be actively assembled and disassembled. >> 

Here AA << extend the classical notion of spinodal states to active solids and demonstrate how these extreme mechanical regimes can be actively accessed. Moreover, (They) show that in a nonlinear setting, crossing elastic spinodals generates new energy wells and makes force channeling an intrinsic feature of the emerging microstructure. >>

Ayan Roychowdhury, Madan Rao, Lev Truskinovsky. Active drive towards elastic spinodals. Phys. Rev. E 111, 065416. Jun 20, 2025.

https://journals.aps.org/pre/abstract/10.1103/h2yp-d2s2

arXiv: 2403.17517v3 [cond-mat.soft]. May 20, 2025.

https://arxiv.org/abs/2403.17517

Also: elastic, transition, instability, disorder & fluctuations, self-assembly, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, transitions, instability, disorder & fluctuations, active matter, elasticity, elastic forces, elastic deformation, elastic spinodals, self-assembly.

# gst: spreading and retraction dynamics of drop impact onto elastic surfaces.

In this study, AA << numerically investigate the impact of droplets on elastic plates using a two-phase lattice Boltzmann method, with a particular focus on how vertical surface movements influence the spreading and retraction dynamics of the droplet. >>

<< The results show that, during the spreading phase, the spreading diameter is smaller on elastic surfaces compared to rigid ones due to the vertical velocity of the surface. A universal linear evolution of the drop spreading is derived for the early stage across both rigid and elastic substrates, accounting for the surface motion by rescaling time, and this relationship is in good agreement with the numerical results. >>

<< In the retraction phase, unlike the nearly constant retraction speed observed on rigid surfaces, the retraction speed 𝑉ret oscillates with the vibrations of the elastic surface, with the oscillation period remaining relatively consistent. Further analysis reveals that the variation in 𝑉ret is not influenced by the surface's velocity but rather by its acceleration, as additional inertia is introduced during surface acceleration. >>

<< Based on this understanding, a predictive model for 𝑉ret during droplet impacts on moving surfaces is proposed, which demonstrates strong agreement with the numerical findings. >>

Yufei Ma, Haibo Huang. Spreading and retraction dynamics of drop impact onto elastic surfaces. Phys. Rev. Fluids 10, 053607. May 15, 2025.

https://journals.aps.org/prfluids/abstract/10.1103/PhysRevFluids.10.053607

Also: drop, droplet, droploid, elastic, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, drops, droplets, droploids, elasticity, elastic surfaces, surface acceleration, vertical surface movements, spreading phase, retraction phase.

# gst: elasticity of fibres prefers the chaos of turbulence.

FIG. 4. Maximal Lyapunov exponents λ1 associated with the flow regions sampled by the fibre centre of masses in a 3D turbulent flow. 

<< Turbulent flows are ubiquitous in nature and are responsible for numerous transport phenomena that help sustain life on earth. >>️

AA << have shown that the stretching of fibres is due only to elasticity and their inertia playing a minimal role as they are advected by a turbulent carrier flow. A highly elastic fibre is much more likely to be stretched out and as a result prefers a “straighter” configuration rather than a coiled one. >>️

<< These inertial, elastic fibres then exhibit non-trivial preferential sampling of a 3D turbulent flow in a manner qualitatively similar to 2D turbulence (..). Inertia leads fibres away from vortical regions while their elasticity pulls them inside the vortices. Upto a moderate inertia (St ∼ O(1)), fibres increasingly prefer the straining regions of the flow, while at much larger inertia (St ≫ 1) they decorrelate from the flow and preference for straining regions begins to diminish again. >>️

<< However, owing to a large elasticity, fibres get trapped in vortical regions (at small St), as well as are unable able to exit the straining regions quickly. A more elastic and extensible fibre is, thus, more likely to spend longer times in both vortical and the straining regions of the flow. >>️

<< This picture of preferential sampling of a 3D turbulent flow by elastic, inertial fibres is also confirmed by alternately studying the chaoticity of the sampled flow regions via Lyapunov Exponents. Less elastic fibres prefer less chaotic (vortical) regions of the flow while more chaotic (straining) regions are preferred at large Wi. LEs also confirm that preferential sampling has a non-monotonic dependence on St for small elasticity but which is lost when Wi becomes very large.  >>

<< It would (..) be even more interesting to see how chaotic the fibre trajectories themselves are and what that has to say about fibre dynamics in turbulent flows. >>️

️

Rahul K. Singh. Elasticity of fibres prefers the chaos of turbulence. arXiv: 2406.06033v1. Jun 10, 2024.

https://doi.org/10.48550/arXiv.2406.06033

Also: elastic, chaos, turbulence, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, elastic, chaos, turbulence

# gst: apropos of instabilities, stability of co-annular active and passive confined fluids.

<< ️The translation and shape deformations of a passive viscous Newtonian droplet immersed in an active nematic liquid crystal under circular confinement are analyzed using a linear stability analysis. (AA) focus on the case of a sharply aligned active nematic in the limit of strong elastic relaxation in two dimensions. >>

<< ️Using an active liquid crystal model, (They) employ the Lorentz reciprocal theorem for Stokes flow to study the growth of interfacial perturbations as a result of both active and elastic stresses. >>

<< ️Instabilities are uncovered in both extensile and contractile systems, for which growth rates are calculated and presented in terms of the dimensionless ratios of active, elastic, and capillary stresses, as well as the viscosity ratio between the two fluids. >>

<< ️(AA) also extend (Their) theory to analyze the inverse scenario, namely, the stability of an active nematic droplet surrounded by a passive viscous layer. (Their) results highlight the subtle interplay of capillary, active, elastic, and viscous stresses in governing droplet stability. >>

<< ️The instabilities uncovered here may be relevant to a plethora of biological active systems, from the dynamics of passive droplets in bacterial suspensions to the organization of subcellular compartments inside the cell and the cell nucleus. >>

Tanumoy Dhar, Michael J. Shelley, David Saintillan. Stability of co-annular active and passive confined fluids. Phys. Rev. Fluids 10, 083103. Aug 21, 2025.

https://journals.aps.org/prfluids/abstract/10.1103/m5ck-v2q3

arXiv: 2501.04918v2 [cond-mat.soft]. Jul 25, 2025. 

https://arxiv.org/abs/2501.04918

Also: drop, droplet, droploid, elastic, instability, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, drop, droplet, droploid, elasticity, instability, elastic relaxation, interfacial perturbations, capillary, active, elastic, and viscous stresses.

# gst: elastic instability of wormlike micelle solution flow in serpentine channels

AA << investigated the flow behavior of a highly elastic, shear-thinning, semi-dilute (Wormlike micelle) WLM solution in serpentine channels at low Reynolds number and moderate Weissenberg numbers. >>

Their << flow visualization experiments revealed three key phenomena: >>

1. << At low Wi, the base flow is steady and laminar but exhibits spatial asymmetry with wall slip, reflecting the shear-thinning and shear banding properties of the WLM solution. Above a critical Wi (..) the flow undergoes an elastic instability and transitions to a 3D unsteady flow state characterized by pronounced spatiotemporal velocity fluctuations. (..). >>

2. << Alongside this unstable bulk flow, dead zones of stagnant fluid form in the downstream portion of halfloops—reflecting the ability of the WLM solution to support shear localization, complementing reports of dead zone formation for other types of complex fluids (..). Due to coupling to the velocity fluctuations in the bulk flow, these dead zones fluctuate in their size; however, they are bounded by a maximalsize that minimizes the fluid streamline curvature, and therefore the generation of elastic stresses. Dead zones also exhibit multistable behavior—forming and persisting in some half-loops, not forming in other half-loops, and randomly switching between these two states. (..). >>

3. << The unstable flow state also features intermittent, 3D “twisting” velocity inversion events amid the spatiotemporally-fluctuating bulk flow. These twisting events reduce the hydrodynamic tortuosity compared to the base flow state, and their geometric structure can also be rationalized as minimizing the fluid streamline curvature, and therefore the generation of elastic stresses. >>

Emily Y. Chen, Sujit S. Datta. Elastic instability of wormlike micelle solution flow in serpentine channels. arXiv: 2504.02951v1 [physics.flu-dyn]. 

https://arxiv.org/abs/2504.02951

Also: elastic, instability, disorder & fluctuations, transition, behav, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, elasticity, instability, disorder & fluctuations, transition, behavior, multistable behavior, randomly switch, twisting events, dead zone

# gst: evolving disorder and chaos induces acceleration of elastic waves.

<< Static or frozen disorder, characterised by spatial heterogeneities, influences diverse complex systems, encompassing many-body systems, equilibrium and nonequilibrium states of matter, intricate network topologies, biological systems, and wave-matter interactions. >>

AA << investigate elastic wave propagation in a one-dimensional heterogeneous medium with diagonal disorder. (They) examine two types of complex elastic materials: one with static disorder, where mass density randomly varies in space, and the other with evolving disorder, featuring random variations in both space and time. (AA) results indicate that evolving disorder enhances the propagation speed of Gaussian pulses compared to static disorder. Additionally, (They) demonstrate that the acceleration effect also occurs when the medium evolves chaotically rather than randomly over time. The latter establishes that evolving randomness is not a unique prerequisite for observing wavefront acceleration, introducing the concept of chaotic acceleration in complex media. >>️

M. Ahumada, L. Trujillo, J. F. Marín. Evolving disorder and chaos induces acceleration of elastic waves. arXiv: 2403.02113v1 [cond-mat.dis-nn]. Mar 4, 2024. 

https://arxiv.org/abs/2403.02113

Also: waves, elastic, chaos, transition, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, waves, elastic, chaos, transition

# gst: apropos of viscoelastic flow instabilities, uncertainty in elastic turbulence.

<< Elastic turbulence can lead to increased flow resistance, mixing and heat transfer. Its control - either suppression or promotion - has significant potential, and there is a concerted ongoing effort by the community to improve our understanding. >>

AA << identify four regimes of uncertainty evolution, characterised by I) rapid transfer to large scales, with large scale growth rates of τ6 (where τ represents time), II) a dissipative reduction of uncertainty, III) exponential growth at all scales, and IV) saturation. These regimes are governed by the interplay between advective and polymeric contributions (which tend to amplify uncertainty), viscous, relaxation and dissipation effects (which reduce uncertainty), and inertial contributions. >>

<< In elastic turbulence, reducing Reynolds number increases uncertainty at short times, but does not significantly influence the growth of uncertainty at later times. At late times, the growth of uncertainty increases with Weissenberg number, with decreasing polymeric diffusivity, and with the logarithm of the maximum length scale, as large flow features adjust the balance of advective and relaxation effects. >>

Jack R. C. King, Robert J. Poole, et al. Uncertainty in Elastic Turbulence. arXiv: 2501.09421v1 [physics.flu-dyn]. Jan 16, 2025. 

https://arxiv.org/abs/2501.09421

Also: uncertainty, elastic, turbulence, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, uncertainty, elastic, elasticity, turbulence 

# gst: local elastic properties of strongly disordered matter

<< The local elastic properties of strongly disordered material are investigated using the theory of correlated random matrices. A significant increase in stiffness is shown in the interfacial region, the thickness of which depends on the strength of disorder. It is shown that this effect plays a crucial role in nanocomposites, in which interfacial regions are formed around each nanoparticle. >>️

D. A. Conyuh, A. A. Semenov, Y. M. Beltukov. Effective elastic moduli of composites with a strongly disordered host material. Phys. Rev. E 108, 045004. Oct 20, 2023. 

https://journals.aps.org/pre/abstract/10.1103/PhysRevE.108.045004

Also: elastic, noise, particle, nano, in https://www.inkgmr.net/kwrds.html

Keywords: gst, elastic, noise, particle, nano

# gst: wake interference effects on flapping dynamics of elastic inverted foil.

AA << study the self-induced flapping dynamics of an inverted elastic foil when placed in tandem with a stationary circular cylinder. The effect of wake interference on the inverted foil's coupled dynamics is examined at a fixed Reynolds number (Re) as a function of nondimensional bending rigidity (𝐾B) and the structure-to-fluid mass ratio (𝑚*). >>

AA << results show that there exists a critical 𝐾B (..), above which the downstream foil is synchronized with the unsteady wake, and the cylinder controls the flapping response and the wake vortex dynamics. During synchronization, two additional flapping modes, namely, the small- and moderate-amplitude flapping mode, are observed as a function of decreasing 𝐾B. Below 𝐾B,Cr, the downstream foil undergoes self-induced large-amplitude flapping (LAF) similar to that of an isolated foil counterpart. >>

<< When the dynamics of the downstream foil are analyzed for a range of 𝑚*, (AA) can characterize the response dynamics into two regions: low and high sensitivity. The high-sensitivity region is observed when the dynamics are controlled by the cylinder vortex shedding, i.e., for foils with high stiffness. In this regime, the foil dynamics is negatively correlated with 𝐾B and 𝑚*. >>

<< The low-sensitivity region is observed when the downstream foil is no longer synchronized with the wake and undergoes an LAF response, with dynamics that are weakly correlated with 𝐾B. A nondimensional parameter is proposed that combines the effect of the foil's inertia and elastic forces and can capture the foil's response when it is subjected to wake interference effects. >>

Aarshana R. Parekh, Rajeev K. Jaiman. Wake interference effects on flapping dynamics of elastic inverted foil. Phys. Rev. Fluids 10, 014702. Jan 16, 2025.

https://journals.aps.org/prfluids/abstract/10.1103/PhysRevFluids.10.014702    arXiv: 2311.09339v3 [physics.flu-dyn]. Apr 25, 2024.   https://arxiv.org/abs/2311.09339

Also: vortex, elastic, transition, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, self-induced flapping dynamics, vortex, elasticity, transitions

# gst: packing in slender structures, the geometry of squeezed elastic beams

<< The behavior of a collection of squeezed elastic beams is determined by geometry, not by complex forces. >>️

Dan Garisto. How Order Emerges in Bendy Beam Bunches. Physics 16, 54. Apr 3, 2023.

https://physics.aps.org/articles/v16/54

<< A collection of thin structures buckle, bend, and bump into each other when confined. This contact can lead to the formation of patterns: hair will self-organize in curls; DNA strands will layer into cell nuclei; paper, when crumpled, will fold in on itself, forming a maze of interleaved sheets. This pattern formation changes how densely the structures can pack, as well as the mechanical properties of the system. >>️

<< Here (AA) study the emergence of order in a canonical example of packing in slender structures, i.e., a system of parallel confined elastic beams. >>️

They << find that the compressive stiffness and stored bending energy of this metamaterial are directly proportional to the number of beams that are geometrically frustrated at any given point.  >>

️

Arman Guerra, Anja C. Slim, et al. Self-Ordering of Buckling, Bending, and Bumping Beams. Phys. Rev. Lett. 130, 148201. Apr 3, 2023.

https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.130.148201

Also

keyword 'self-assembly' in FonT

https://flashontrack.blogspot.com/search?q=self-assembly

keyword 'elastic' in FonT

https://flashontrack.blogspot.com/search?q=elastic

keyword 'elastico' in Notes

(quasi-stochastic poetry)

https://inkpi.blogspot.com/search?q=elastico

Keywords: gst, self-assembly, beams, buckling, bending, bumping, elasticity

# gst: coupling an elastic string to an active bath: the emergence of inverse damping.

<< ️The interaction between continuous media and particles is a central topic in much of modern physics, and this (AA) paper specifically addresses the transfer of persistence and activity between particles and waves. Indeed, setting up a nonequilibrium dynamics of continuous (field) degrees of freedom requires understanding how that arises from coupling with active matter degrees of freedom. >>

<< ️Within that program, (AA) have studied a system of fast-moving, overdamped, run-and-tumble particles moving on and interacting with a slower string modeled as a scalar Klein-Gordon field. Using time scale separation and weak coupling, (They) have derived an effective fluctuation dynamics for the field after integrating out the active bath. Akin to Landau (inverse) damping, the particles induce friction on the scalar field given by an explicit time correlation for bath observables. >>

<< ️Depending on the level of activity and persistence of the active particles (and their velocity distribution), this friction can be negative, leading to instability. This emergence of negative (linear) friction for an elastic string extends previous results where the probe is a slow inertial particle in an active medium, (..), except that the acceleration (creating transverse waves) is orthogonal to the active motion. >>

Aaron Beyen, Christian Maes, Ji-Hui Pei. Coupling an elastic string to an active bath: The emergence of inverse damping. arXiv: 2505.18665v2 [cond-mat.stat-mech]. Sep 1, 2025.

https://arxiv.org/abs/2505.18665

Phys. Rev. E 112, L042103. Oct 17, 2025.

https://journals.aps.org/pre/abstract/10.1103/g1zm-23sq

Also: particle, waves, elastic, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, particles, run-and-tumble particles, waves, elasticity, elastic strings, wave-particle interactions.

# gst: effective-medium theory for elastic systems with correlated disorder.

<< ️Correlated structures are intimately connected to intriguing phenomena exhibited by a variety of disordered systems such as soft colloidal gels, bio-polymer networks and colloidal suspensions near a shear jamming transition. The universal critical behavior of these systems near the onset of rigidity is often described by traditional approaches as the coherent potential approximation - a versatile version of effective-medium theory that nevertheless have hitherto lacked key ingredients to describe disorder spatial correlations. >>

<< ️Here (AA) propose a multi-purpose generalization of the coherent potential approximation to describe the mechanical behavior of elastic networks with spatially-correlated disorder. (They) apply (their) theory to a simple rigidity-percolation model for colloidal gels and study the effects of correlations in both the critical point and the overall scaling behavior. (AA) find that although the presence of spatial correlations (mimicking attractive interactions of gels) shifts the critical packing fraction to lower values, suggesting sub-isostatic behavior, the critical coordination number of the associated network remains isostatic. More importantly, (AA) discuss how their theory can be employed to describe a large variety of systems with spatially-correlated disorder. >>

Jorge M. Escobar-Agudelo, Rui Aquino, Danilo B. Liarte. Effective-medium theory for elastic systems with correlated disorder. arXiv: 2510.02090v1 [cond-mat.stat-mech]. Oct 2, 2025.

https://arxiv.org/abs/2510.02090

Also: elastic, network, disorder, disorder & fluctuations, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, elasticity, networks, elastic networks, disorder, disorder & fluctuations.

# gst: odd electrical circuits

<< Non-reciprocal interactions in elastic media give rise to rich non-equilibrium behaviors, but controllable experimental realizations of such odd elastic phenomena remain scarce. Building on recent breakthroughs in electrical analogs of non-Hermitian solid-state systems, (AA) design and analyze scalable odd electrical circuits (OECs) as exact analogs of an odd solid. >>

AA << show that electrical work can be extracted from OECs via cyclic excitations and trace the apparent energy gain back to active circuit elements. (They) show that OECs host oscillatory modes that resemble recent experimental observations in living chiral crystals and identify active resonances that reveal a perspective on odd elasticity as a mechanism for mechanical amplification. >>️

Harry Walden, Alexander Stegmaier, et al. Odd electrical circuits. arXiv: 2503.14383v1 [cond-mat.soft]. Mar 18, 2025.

https://arxiv.org/abs/2503.14383

Also: chiral, elastic, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, chirality, chiral crystals, chiral oscillations, chiral waves, oddity, odd elastic materials

# gst: apropos of transitions, perspectives on viscoelastic flow instabilities; the 'porous individualism'

<< given the observation that disorder can suppress the transition to elastic turbulence in 2D porous media (..), it has been unclear whether and how this transition manifests in disordered 3D media — though elastic turbulence has been speculated to underlie the long-standing observation that the macroscopic flow resistance of an injected polymer solution can abruptly increase above a threshold flow rate in a porous medium, but not in bulk solution >>️

AA << found that the transition to unstable flow in each pore is continuous, arising due to the increased persistence of discrete bursts of instability above a critical value of the characteristic (Weissenberg no.) Wi; however, the onset value varies from pore to pore. This observation that single pores exposed to the same macroscopic flow rate become unstable in different ways provides a fascinating pore-scale analog of “molecular individualism” [P.  De Gennes, Molecular individualism. Science 276, 1999–2000 (1997)], in which single polymers exposed to the same extensional flow elongate in different ways; the authors therefore termed it “porous individualism”, although it is important to note that here, this effect is still at the continuum (not molecular) scale. Thus, unstable flow is spatially heterogeneous across the different pores of the medium, with unstable and laminar regions coexisting >>

AA << quantitatively established that the energy dissipated by unstable pore-scale fluctuations generates an anomalous increase in flow resistance through the entire medium that agrees well with macroscopic pressure drop measurements. >>

Sujit S. Datta, Arezoo M. Ardekani, et al. Perspectives on viscoelastic flow instabilities and elastic turbulence. arXiv: 2108.09841v1 [physics.flu-dyn]. Aug 22, 2021. 

https://arxiv.org/abs/2108.09841

Also

keyword 'transition' | 'transitional' in FonT

https://flashontrack.blogspot.com/search?q=transition

https://flashontrack.blogspot.com/search?q=transitional

keyword 'transition' | 'transizion*' in Notes (quasi-stochastic poetry)

https://inkpi.blogspot.com/search?q=transition

https://inkpi.blogspot.com/search?q=transizione

https://inkpi.blogspot.com/search?q=transizioni

keywords: gst, droplet, fluctuations, disorder, instability, viscoelastic flow instability, turbulence, elastic turbulence, individualism, porous individualism, transition

# gst: period-doubling route to chaos in viscoelastic flows

<< Polymer solutions can develop chaotic flows, even at low inertia. This purely elastic turbulence is well studied, but little is known about the transition to chaos. In two-dimensional (2D) channel flow and parallel shear flow, traveling wave solutions involving coherent structures are present for sufficiently large fluid elasticity. >>

AA << numerically study 2D periodic parallel shear flow in viscoelastic fluids, and (They) show that these traveling waves become oscillatory and undergo a series of period-doubling bifurcations en-route to chaos. >>

Jeffrey Nichols, Robert D. Guy, Becca Thomases. Period-doubling route to chaos in viscoelastic Kolmogorov flow. Phys. Rev. Fluids 10, L041301. Apr 17, 2025.

https://journals.aps.org/prfluids/abstract/10.1103/PhysRevFluids.10.L041301

Also: chaos, waves, elastic, turbulence, transition, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, chaos, waves, traveling waves, elasticity, viscoelastic fluids, turbulence, elastic turbulence, period-doubling bifurcations, transitions

# gst: bubble phases sliding over periodically modulated substrates

AA << analyze a bubble-forming system composed of particles with competing long-range repulsive and short-range attractive interactions driven over a quasi-one-dimensional periodic substrate. >>️

They << find various pinned and sliding phases as a function of substrate strength and drive amplitude. When the substrate is weak, a pinned bubble phase appears that depins elastically into a sliding bubble lattice. For stronger substrates, (AA) find anisotropic bubbles, disordered bubbles, and stripe phases. Plastic depinning occurs via the hopping of individual particles from one bubble to the next in a pinned bubble lattice, and as the drive increases, there is a transition to a state where all of the bubbles are moving but are continuously shedding and absorbing individual particles. This is followed at high drives by a moving bubble lattice in which the particles can no longer escape their individual bubbles. >>️

<< When the bubbles shrink due to an increase in the attractive interaction term, they fit better inside the pinning troughs and become more strongly pinned, leading to a reentrant pinning phase. For weaker attractive terms, the size of the bubbles becomes greater than the width of the pinning troughs and the depinning becomes elastic with a reduced depinning threshold. >>

️

C. Reichhardt, C.J.O. Reichhardt. Sliding dynamics for bubble phases on periodic modulated substrates. Phys. Rev. Research 6, 023116. May 2, 2024.

https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.6.023116

Also: bubble, elastic, transition, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, bubble, pinned bubble, elastic, transition

# gst: allosteric lever: toward a principle of specific allosteric response.

<< ️Allostery, the phenomenon by which the perturbation of a molecule at one site alters its behavior at a remote functional site, enables control over biomolecular function. >>

<< ️However, a general principle of allostery, i.e., a set of quantitative and transferable “ground rules,” remains elusive. It is neither a set of structural motifs nor intrinsic motions. >>

<< ️Focusing on elastic network models, (AA) here show that an allosteric lever—a mode-coupling pattern induced by the perturbation—governs the directional, source-to-target, allosteric communication: A structural perturbation of an allosteric site couples the excitation of localized hard elastic modes with concerted long-range soft-mode relaxation. >>

<< ️Perturbations of nonallosteric sites instead couple hard and soft modes uniformly. The allosteric response is shown to be generally nonlinear and nonreciprocal, and allows for minimal structural distortions to be efficiently transmitted to specific changes at distant sites. Allosteric levers exist in proteins and “pseudoproteins”—networks designed to display an allosteric response. >>

<< ️Interestingly, protein sequences that constitute allosteric transmission channels are shown to be evolutionarily conserved. >>

Maximilian Vossel, Bert L. de Groot, Aljaž Godec. Allosteric Lever: Toward a Principle of Specific Allosteric Response. Phys. Rev. X 15, 021097. Jun 20, 2025

https://journals.aps.org/prx/abstract/10.1103/wv2k-676p

Also: allostery in FonT https://flashontrack.blogspot.com/search?q=allostery

Also: allosterico in Notes (quasi-stochastic poetry) https://inkpi.blogspot.com/search?q=allosterico

Keywords: gst, allostery, allosteric lever, elasticity, networks, elastic networks.

# gst: spontaneous emergence of solitary waves in active flow networks.

<< ️Flow networks are fundamental for understanding systems such as animal and plant vasculature or power distribution grids. These networks can encode, transmit, and transform information embodied in the spatial and temporal distribution of their flows. >>

<< ️In this work, (AA) focus on a minimal yet physically grounded system that allows (Them) to isolate the fundamental mechanisms by which active flow networks generate and regulate emergent dynamics capable of supporting information transmission. The system is composed of active units that pump fluid and elastic units that store volume. From first principles, (They) derive a discrete model-an active flow network-that enables the simulation of large systems with many interacting units. >>

<< ️Numerically, (AA) show that the pressure field can develop solitary waves, resulting in the spontaneous creation and transmission of localized packets of information stored in the physical properties of the flow. (They) characterize how these solitary waves emerge from disordered initial conditions in a one-dimensional network, and how their size and propagation speed depend on key system parameters. >>

<< ️Finally, when the elastic units are coupled to their neighbors, the solitary waves exhibit even richer dynamics, with diverse shapes and finite lifetimes that display power-law behaviors that (They) can predict analytically. >>

Rodrigo Fernández-Quevedo García, Gonçalo Cruz Antunes, Jens Harting, et al. Spontaneous emergence of solitary waves in active flow networks. arXiv: 2511.13448v1 [physics.flu-dyn]. Nov 17, 2025.

https://arxiv.org/abs/2511.13448

Also: soliton, waves, network, elastic, in https://www.inkgmr.net/kwrds.html 

Keywords: gst, solitons, waves, solitary waves, networks, active flow networks, active matter, fluid-structure interactions, elasticity.

# gst: how to create a helix from a straight rod, “twist” or “bend” approaches.

<< There are two independent ways of creating a helix from a straight rod: curl the rod into a circle and then twist the rod all along its length to convert the ring into a helix (“twist” method), or deform the rod into a sine wave and then bend it with a sinusoidal distortion that curls at right angles to the first sine wave (“bend” method). Both procedures produce the same shape, but they generate different internal stresses within the rod, and their implementations require different amounts of energy. >>️

AA << say that their experiments could serve as a model for many physical systems that undergo handedness transitions, including the tendrils of plants, the flagella of microorganisms, and the strands of DNA molecules.  >>

️

David Ehrenstein. Two Experimental Observations of Helix Reversals. Physics 16, s158. Oct 24, 2023.  

https://link.aps.org/doi/10.1103/Physics.16.s158

Paul M. Ryan, Joshua W. Shaevitz,  Charles W. Wolgemuth. Bend or Twist? What Plectonemes Reveal about the Mysterious Motility of Spiroplasma. Phys. Rev. Lett. 131, 178401. Oct 24, 2023. 

https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.131.178401

Emilien Dilly, Sebastien Neukirch, Julien Derr, Drazen Zanchi. Traveling Perversion as Constant Torque Actuator. Phys. Rev. Lett. 131, 177201. Oct 24, 2023. 

https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.131.177201

Also: elastic, swim, in https://www.inkgmr.net/kwrds.html

Keywords: gst, elastic, elastic deformation, swimming

# gst: instability and self-propulsion of flexible autophoretic filaments; it was observed distinct swimming modes, steadily translating "U" and metastable rotating "S" shapes.

<< ️Over the past decade, autophoretic colloids have emerged as a prototypical system for studying self-propelled motion at microscopic scales, with promising applications in microfluidics, micro-machinery, and therapeutics. Their motion in a viscous fluid hinges on their ability to induce surface slip flows that are spatially asymmetric, from self-generated solute gradients. >>

<<️ Here, (AA) demonstrate theoretically that a straight elastic filament with homogeneous surface chemical properties -- which is otherwise immotile -- can spontaneously achieve self-propulsion by experiencing a buckling instability that serves as the symmetry-breaking mechanism. Using efficient numerical simulations, (They) characterize the nonlinear dynamics of the elastic filament and show that, over time, it attains distinct swimming modes such as a steadily translating "U" shape and a metastable rotating "S" shape when semi-flexible, and an oscillatory state when highly flexible. >>

Ursy Makanga, Akhil Varma, Panayiota Katsamba. Instability and self-propulsion of flexible autophoretic filaments. arXiv: 2509.10153v1 [cond-mat.soft]. Sep 12, 2025.

https://arxiv.org/abs/2509.10153

Also: colloids, elastic, instability, transition,  in https://www.inkgmr.net/kwrds.html 

Keywords: gst, colloids, autophoretic colloids, elasticity, instability, buckling instability, symmetry-breaking mechanisms, self-propulsion, transitions.