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Visualizzazione dei post in ordine di pertinenza per la query swimming. Ordina per data Mostra tutti i post
Visualizzazione dei post in ordine di pertinenza per la query swimming. Ordina per data Mostra tutti i post

giovedì 10 settembre 2020

# gst: the dance (swimming and sinking behavior) of pelagic snails

<< Swimming and sinking behavior by pelagic snails is poorly studied but is important in their ecology, predator-prey interactions, and vertical distributions. >>

AA << focused on how the shell shape, body geometry, and body size affect their swimming behavior from a fluid mechanics perspective. In addition, ZooScan image analysis and metabarcoding of archived vertically stratified MOCNESS samples were used to relate swimming behaviors to night time and daytime vertical distributions. While different large scale swimming patterns were observed, all species exhibited small scale sawtooth swimming trajectories caused by reciprocal appendage flapping. Thecosome swimming and sinking behavior corresponded strongly with shell morphology and size, with the tiny coiled shell pteropods swimming and sinking the slowest, the large globular shelled pteropods swimming and sinking the fastest, and the medium-sized elongated shell pteropods swimming and sinking at intermediate speeds. However, the coiled shell species had the highest normalized swimming and sinking speeds, reaching swimming speeds of up to 45 body lengths s–1. The sinking trajectories of the coiled and elongated shell pteropods were nearly vertical, but globular shell pteropods use their hydrofoil-like shell to glide downwards at approximately 20° from the vertical, thus retarding their sinking rate. The swimming Reynolds number (Re) increased from the coiled shell species [Re ∼ O(10)] to the elongated shell species [Re ∼ O(100)] and again for the globular shell species [Re ∼ O(1000)], suggesting that more recent lineages increased in size and altered shell morphology to access greater lift-to-drag ratios available at higher Re. Swimming speed does not correlate with the vertical extent of migration, emphasizing that other factors, likely including light, temperature, and predator and prey fields, influence this ecologically important trait. Size does play a role in structuring the vertical habitat, with larger individuals tending to live deeper in the water column, while within a species, larger individuals have deeper migrations. >>

Ferhat Karakas, Jordan Wingate, et al. Swimming and Sinking Behavior of Warm Water Pelagic Snails. Front. Mar. Sci. doi: 10.3389/ fmars.2020.556239. Sep 7, 2020. 


<< And it's stunning to think that these sea butterflies are using the same fluid dynamics principles to fly through water that insects use to fly through air, >> David Murphy.

Poetry in motion: Engineers analyze the fluid physics of movement in marine snails. Frontiers. Sep 07, 2020


Also

<< Snails usually lumber along on their single fleshy foot; but not sea butterflies (Limacina helicina). These tiny marine molluscs gently flit around their Arctic water homes propelled by fleshy wings that protrude out of the shell opening. >>

These << snails swim using the same technique as flying insects, beating their wings in a figure-of-eight pattern,>>

Bizarre snail that swims like a flying insect. The Company of Biologists. Feb 17, 2016. 


David W. Murphy, Deepak Adhikari, et al. Underwater flight by the planktonic sea butterfly. Journal of Experimental Biology. 2016 219: 535-543. doi: 10.1242/jeb.129205. Feb 17, 2016.






martedì 15 novembre 2022

# gst: self-buckling and self-writhing of semi-flexible Entities (among P. mirabilis)

<< Multi-flagellated microorganisms can buckle and writhe under their own activity as they swim through a viscous fluid. New equilibrium configurations and steady-state dynamics then emerge which depend on the organism's mechanical properties and on the oriented distribution of flagella along its surface. Modeling the cell body as a semi-flexible Kirchhoff rod and coupling the mechanics to a dynamically evolving flagellar orientation field, (AA) derive the Euler-Poincaré equations governing dynamics of the system, and rationalize experimental observations of buckling and writhing of elongated swarmer P. mirabilis cells. >>

<< A sequence of bifurcations is identified as the body is made more compliant, due to both buckling and torsional instabilities. The results suggest that swarmer cells invest no more resources in maintaining membrane integrity than is necessary to prevent self-buckling. >>
Wilson Lough, Douglas B. Weibel, et al. Self-buckling and self-writhing of semi-flexible microorganisms. arXiv: 2211.04381v1 [cond-mat.soft]. Nov 8, 2022. 

Also 

keyword 'swimming' in FonT

Keywords: gst, motility, swarm, swarming, swarmer, swim, swimming, swimmer, buckling, writhing. 


martedì 15 febbraio 2022

# gst: transitional dynamics among gyrotactic (prolate spheroid) swimmers in turbulence


<< In this study, (AA) consider small, elongated, gyrotactic, swimming particles in homogenous isotropic turbulence (..). Many motile phytoplankton species are gyrotactic, i.e., their swimming direction results from the competition between shear-induced viscous torque and the stabilizing torque due to bottom-heaviness. (..)  Moreover, both single phytoplankton cells and multicellular phytoplankton chains can have elongated shapes, which makes the study of gyrotactic active particles with prolate shapes necessary. >>

AA addressed the following problems:
<< (i) How the clustering is affected by the swimming number Φ and the stability number Ψ? In particular, how to characterize the extent of clustering based on the three-dimensional Voronoi analysis?
(ii) How the clustering is related to the flow structures? This question has two perspectives.  From the space perspective, what are the regions that particles accumulate in? From the time perspective, how long do particles exist in an aggregated state? >>

Zehua Liu, Linfeng Jiang, Chao Sun. Accumulation and alignment of elongated gyrotactic swimmers in turbulence. arXiv:2202.04351v1 [physics.flu-dyn]. Feb 9, 2022.


Also

The effect of noise on the dynamics of microswimmers in externally-driven fluid flows.  


keywords 'turbulence' in FonT   


keywords 'turbolento' in Notes (quasi-stochastic poetry)


keywords: transition, swimmers,  gyrotactic swimmers, spheroids,  prolate spheroids, stability, turbulence


venerdì 22 ottobre 2021

# gst: the effect of noise on the dynamics of microswimmers in externally-driven fluid flows.

AA << have quantified the effect of noise on swimmer dynamics in a steady, two-dimensional hyperbolic fluid flow. In such a flow, swimmers are ultimately forced to escape to the left or the right, with their transient dynamics near the passive unstable fixed point determining which way they go. >>

<< Without noise, a swimmer’s fate is sealed based on its position relative to the SwIM (swimming invariant manifolds) in the xθ phase space. With noise, the swimmer’s motion is a stochastic process. >>

AA << calculated the steady-state orientation distributions of diffusive, run-and-tumble, or mixed swimmers in the hyperbolic flow. The fluctuations give some swimmers greater opportunity to cross the SwIM and exit on the opposite side than they would have without noise. There is however a maximal distance that swimmers can get on either side of the passive fixed point and still be able to swim back to the other side—this is where the stable BIMs (burning invariant manifolds) block inward swimming particles. >>

<< Fluctuations make it increasingly likely that a swimmer close to one of these BIMs does indeed end up crossing it, causing irreversible changes to the fluctuating swimmers’ trajectories (assuming negligible translational diffusion).  >>️

Simon A. Berman, Kevin A. Mitchell. Swimmer dynamics in externally-driven fluid flows: The role of noise. arXiv: 2108.10488v1 [physics.flu-dyn]. Aug 24, 2021.


keywords: gst, swimmer, swimming particle, fluid dynamics, chaotic dynamics, rotational diffusion, random fluctuation, tumbling, noise


venerdì 3 settembre 2021

# gst: apropos of transitions, when a liquid droplet takes a turn (as a swimming behavior of amoebas)

Masatoshi Ichikawa and coll.  << have analyzed the conditions that cause self-propelling droplets to take linear or curved trajectories. The team studied water droplets between 60 and 800 μm across as they moved through oil that contained a surfactant. The droplets moved as a result of the Marangoni effect, in which an unequal distribution of surfactant molecules on the surface of each droplet creates a surface-tension gradient. (They) found that larger droplets tended to follow more tightly curved paths than smaller droplets. To understand the cause of this difference, Ichikawa and coll.  created a 3D model describing the concentration of surfactant on the surface of the droplets. They also studied the droplets’ internal flow, by observing the paths of small tracer particles. They characterized this flow as the sum of multiple patterns of fluid motion present in each droplet, including radial, dipolar, and quadrupolar motion. These patterns of motion were determined by the surface-tension gradients created by the uneven surfactant distribution on each droplet. In turn, such patterns controlled how the droplets moved. In particular, the team found that the angular difference between the dipolar and quadrupolar flows within droplets was strongly correlated with more curved droplet trajectories. In larger droplets, this angle changed more easily, causing the tightly curved trajectories. The researchers say that this fundamental mechanism may also influence the swimming behavior of amoebas.  >>️

Sophia Chen. When Liquid Droplets Take a Turn. Physics 14, s109. Aug 19, 2021.


Saori Suda, Tomoharu Suda, et al. Straight-to-Curvilinear Motion Transition of a Swimming Droplet Caused by the Susceptibility to Fluctuations. Phys. Rev. Lett. 127, 088005. Aug 19, 2021.








martedì 3 novembre 2020

# life: the 'built-in float' of an ancient marine predator

<< About 240 million years ago, when reptiles ruled the ocean, a small lizard-like predator floated near the bottom of the edges in shallow water, picking off prey with fang-like teeth. >>

<< Our analysis of two well-preserved skeletons reveals a reptile with a broad, pachyostotic body (denser boned) and a very short, flattened tail. A long tail can be used to flick through the water, generating thrust, but the new species we've identified was probably better suited to hanging out near the bottom in shallow sea, using its short, flattened tail for balance, like an underwater float, allowing it to preserve energy while searching for prey, >> Qing-Hua Shang.

<< Perhaps this small, slow-swimming marine reptile had to be vigilante for large predators as it floated in the shallows, as well as being a predator itself, >> Xiao-Chun Wu.

Taylor & Francis. Ancient marine predator had a built-in float. Oct 28, 2020. 


Qing-Hua Shang, Xiao-Chun Wu, Chun Li. A New Ladinian Nothosauroid (Sauropterygia) from Fuyuan, Yunnan Province, China. Journal of Vertebrate Paleontology. doi: 10.1080/ 02724634.2020.1789651. Oct 29, 2020.





lunedì 19 dicembre 2022

# gst: behavior of microswimmers in a vortex with translational and rotational noise

AA << propose a theoretical model to investigate the dynamics of elongated microswimmers in elementary vortices, namely active particles in two- and three-dimensional rotlets. A deterministic model first reveals the existence of bounded orbits near the centre of the vortex and unbounded orbits elsewhere. (AA) further discover a conserved quantity of motion that allows (..) to map the phase space according to the type of the orbit (bounded vs unbounded). (They) next introduce translational and rotational noise into the system. Using a Fokker--Planck formalism, (AA) quantify the quality of trapping near the centre of the vortex by examining the probability of escape and the mean time of escape from the region of deterministically bounded orbits. (AA) finally show how to use these findings to formulate a prediction for the radius of the depletion zone, which compares favourably with the experiments of Sokolov and Aranson (2016). >>

Ivan Tanasijevic, Eric Lauga. Microswimmers in vortices: Dynamics and trapping. arXiv: 2211.05866v1 [physics.bio-ph].  Nov 10, 2022. 

Also

'microswimmers' in FonT 

Keywords: gst, behav, translation,  rotation, trapping, noise, swimmer, swimming,  microswimmers, fluid dynamics, vortex, vortices, vortexes, vorticity




martedì 31 ottobre 2023

# gst: how to create a helix from a straight rod, “twist” or “bend” approaches.

<< There are two independent ways of creating a helix from a straight rod: curl the rod into a circle and then twist the rod all along its length to convert the ring into a helix (“twist” method), or deform the rod into a sine wave and then bend it with a sinusoidal distortion that curls at right angles to the first sine wave (“bend” method). Both procedures produce the same shape, but they generate different internal stresses within the rod, and their implementations require different amounts of energy. >>️

AA << say that their experiments could serve as a model for many physical systems that undergo handedness transitions, including the tendrils of plants, the flagella of microorganisms, and the strands of DNA molecules.  >>
David Ehrenstein. Two Experimental Observations of Helix Reversals. Physics 16, s158. Oct 24, 2023.  

Paul M. Ryan, Joshua W. Shaevitz,  Charles W. Wolgemuth. Bend or Twist? What Plectonemes Reveal about the Mysterious Motility of Spiroplasma. Phys. Rev. Lett. 131, 178401. Oct 24, 2023. 

Emilien Dilly, Sebastien Neukirch, Julien Derr, Drazen Zanchi. Traveling Perversion as Constant Torque Actuator. Phys. Rev. Lett. 131, 177201. Oct 24, 2023. 

Also: elastic, swim, in https://www.inkgmr.net/kwrds.html

Keywords: gst, elastic, elastic deformation, swimming



martedì 22 maggio 2018

# zoo: the first look at Oyster's transitional adhesive dynamics

AA << still do not have a clear picture of how these animals attach to surfaces. Efforts described herein provide the first examination of adhesion at the transition from free swimming larvae to initial substrate attachment, through metamorphosis, and on to adulthood. Two different bonding systems were found to coexist >>

Andres M. Tibabuzo Perdomo, Erik M. Alberts, et al.  Changes in Cementation of Reef Building Oysters Transitioning from Larvae to Adults. ACS Appl. Mater. Interfaces. 2018; 10 (17): 14248-53 doi: 10.1021/acsami.8b01305. Apr 13, 2018.

https://pubs.acs.org/doi/10.1021/acsami.8b01305

Kayla Zacharias. Oysters: one animal, two glues. Purdue University. May 7, 2018.

https://m.phys.org/news/2018-05-oysters-animal.html

martedì 10 agosto 2021

# ai.bot: a mechanism of analogy could be the master key to achieving an abstract artificial intelligence

<< It’s understanding the essence of a situation by mapping it to another situation that is already understood, (..) If you tell me a story and I say, ‘Oh, the same thing happened to me,’ literally the same thing did not happen to me that happened to you, but I can make a mapping that makes it seem very analogous. It’s something that we humans do all the time without even realizing we’re doing it. We’re swimming in this sea of analogies constantly. >> Melanie Mitchell.
John Pavlus. The Computer Scientist Training AI to Think With Analogies. QuantaMag. Jul 14, 2021.



Also

here a fuzzy example:  "qui non e' impossibile immaginare ..." (here it is not impossible to imagine ... )
in: Notes. Dec 31, 2015 (quasi-stochastic poetry)


keyword 'gst' (general system theory) in FonT 


keyword 'organoids' in FonT


keyword 'ai' | 'bot' in FonT



keyword 'ia' | 'ai' | 'robota' in Notes (quasi-stochastic poetry)






martedì 25 agosto 2020

# gst: behavioral teleporting as a real-time transfer of the complete ethogram of a live entity onto a remotely-located robotic replica.

AA << established "behavioral teleporting" as an experimental solution to independently manipulate multiple factors underpinning social interactions. Behavioral teleporting consists of real-time transfer of the complete ethogram of a live zebrafish onto a remotely-located robotic replica. Through parallel and simultaneous behavioral teleporting, (they) studied the interaction between two live fish swimming in remotely-located tanks: each live fish interacted with an inanimate robot that mirrored the behavior of the other fish, and the morphology of each robot was independently tailored. (They) results indicate that behavioral teleporting can preserve natural interaction between two live animals, while allowing fine control over morphological features that modulate social behavior. >>

Mert Karakaya, Simone Macrì, Maurizio Porfiri. Behavioral Teleporting of Individual Ethograms onto Inanimate Robots: Experiments on Social Interactions in Live Zebrafish.  iScience.   Vol 23, Issue 8, 101418. doi: 10.1016/ j.isci.2020.101418. Jul 28, 2020.


Beam me up: Researchers use 'behavioral teleporting' to study social interactions. NYU Tandon School of Engineering. Aug 24, 2020.


Also

<< qui non e' impossibile immaginare una entita' di intelligenza artificiale (AI) che, in modalita' autonoma, intenda utilizzare "le immagini" di uno scenario in transizione di questo tipo come modello base di prima approx per l'analisi del comportamento e le previsioni all'interno di un sistema costituito da entita' altre ... ad es. all'interno di un  contesto culturale umano; >>

Anomalous formation of molecules after vapor deposition.  Dec 31, 2015.